Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2399 361 5e-95 seq2181 206 2e-48 seq2456 114 1e-20 seq580 111 1e-19 >seq2399 Length=11591 Score = 361 bits (400), Expect = 5e-95 Identities = 965/1452 (66%), Gaps = 38/1452 (3%) Strand=Plus/Minus Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACG 22511 |||| || ||||| |||||||| | || || ||||| ||| | |||| ||| | | Sbjct 4687 GGTTGACGACTTGGAACTCGCCAGCCAGCACACGGCGGGTGTACAGGTTGCTCGTGTAAG 4628 Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571 | || || | || ||| ||||| |||||| ||||| || |||||||| || || | Sbjct 4627 GCTCAAAGCACTCGTTGAAGCCCAGGATCTGACTCGTCGAGGCCGTCGGCATAGGTGCGA 4568 Query 22572 ACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCC 22631 || |||||||| | | |||||| | ||| || | ||||| | | |||||||| Sbjct 4567 GCAACAGCGAGTTCCGGAGACCGTGCGAGGCAATGTTGCGCTTGATCTCAGCCCAGTCCC 4508 Query 22632 ACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCG 22691 | ||| || || || || | |||||| ||||| || | | |||| || |||| Sbjct 4507 AAAGACCGCTGGGGGTAAC---GCACCACATGTCGTACTGGAGCTCGCCCTTGCTGGCCG 4451 Query 22692 GGCTGCCTTCGTACGTTTCGTACGGACCATATATCGC-GGCAAGTTCGCA-GCTCGCCTC 22749 ||| ||| ||||| || ||||| || || | || |||||| ||||| | |||| || Sbjct 4450 GGCAGCCCTCGTATGTCTCGTA-GGTCCCGAGCTCCTTGGCAAGCTCGCACGATCGC-TC 4393 Query 22750 CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA-TTC--GGCGGCGGCGAC 22806 | ||| ||| || || ||||||||||| | |||| | ||| ||| ||| ||| Sbjct 4392 AAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTTCTTGGCCTCGG-GAC 4334 Query 22807 GCTTTCGTACGGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATAC 22865 | || | ||| || | ||| |||| ||| ||||| || | ||| | || || || | Sbjct 4333 --TGTCAAA-GGCGTAGCCCATGATCATGAATGCGTCTGCGAGACCGTTGACTCCGATGC 4277 Query 22866 CGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAAT 22925 |||| || |||| || |||||| || |||||||||| ||| || | ||| | Sbjct 4276 CGATGGGGCGGTGGCGCATGTTCGACTTCTTGGCCTCGGGCACAGGGTAGTAGTTCACGT 4217 Query 22926 CGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGT 22985 |||| | |||| | ||| | || | || || | | |||| Sbjct 4216 CGATGATCTTGTTGAGGTTGCCACAGACGACCTTGGTGACCTCGTGAAGCTTCTTGAAGT 4157 Query 22986 CGTAAACGCCCGA-TTG---TACAA--CAAACTTGTTGA----CGGC-GATCGA----GG 23030 | || | || ||| | | | | | | | || |||| || | | || Sbjct 4156 CATATGTCCTCGTGTTGGTTTGCGAGTCGTAATGGATGTAGGTCGGCAGAGCCATACTGG 4097 Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGA-CG-TGTACTCTACAATTTCGGTACATAG 23088 |||| ||||| || || |||||||| ||| || ||||||||| || || || || || Sbjct 4096 CAAGGTTGCAGACAGCGACCTCGTCC--GGAGCGCTGTACTCTATGATCTCCGTGCAAAG 4039 Query 23089 ATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTT 23148 || ||| || ||||| | || ||||||| || || ||| | ||||| Sbjct 4038 GTTAGAGTTCTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCAGCGTCCTT 3979 Query 23149 GTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGT 23208 ||| |||||| | || |||| ||||| ||| | ||| | | || ||| | | Sbjct 3978 GTAAAGCATGAAAGGGTTGCCAGTCTCCGTCTGGGCCTCCAGAACGGCGTACCAGAGCTT 3919 Query 23209 CTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGT 23267 |||||| | || ||| || | | || || ||||||||| | ||| | || | Sbjct 3918 CTGAGCCTTGAC-CGTGCGGCGAGCACGACCCTCGCGCTCGTACTTCTCGTAGAGGGCCT 3860 Query 23268 CAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGA-CACATGAGACTC 23326 | ||||| |||| || |||||| || ||||| | | || ||| |||||||| | Sbjct 3859 CGAATTCCTCACCATAGACGTCGGCAAGACCGGGGCACT-CAGCGGGGCACATGAGCGAC 3801 Query 23327 CACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAAC 23386 ||| | || | ||| || || |||| || | || || ||||| || |||||||| Sbjct 3800 CACTCTCCGTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCAAAGGGCGTAGAAG 3741 Query 23387 AGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAAC 23446 || || |||||||| |||||||| |||||| |||||| | | || | || || || Sbjct 3740 AGCTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAACTCGAAG 3681 Query 23447 ACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCC 23506 ||||||| ||||| ||||| | ||| | |||||| || ||||||| ||| ||||| ||| Sbjct 3680 ACGTCCGAGTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCGCTTGTTGCCACCC 3621 Query 23507 TGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGAC 23566 || |||||||| || || ||||||||| | |||| ||||| || || | |||||||| Sbjct 3620 TGGTCGACGTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAACAATGCCGTTGGAG 3561 Query 23567 GCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCT 23626 ||||| || || | || || | |||| | | ||||| || || || Sbjct 3560 ACGCCGTTGGTTCCAGCAATGTAAGAGCCGGTGCCTCGGATGCAGTGAATGTTGAGCCCG 3501 Query 23627 ATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCG 23686 ||||| ||| ||| || ||||| ||||| || || |||||||||||||| ||| Sbjct 3500 ATGCCACCGGCCGTCTTGCTGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATGCCGTCG 3441 Query 23687 ATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCG 23746 ||| ||| || || ||| ||||| ||| || || ||||| || | ||||| || || Sbjct 3440 ATGGAGTCATCCTTCATCGTGACCAGGAAGCAGGATGACATCTGGGGATTGGGTGTTCCG 3381 Query 23747 GCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTG 23806 || ||| || || || |||||| || ||||| | |||||| || ||||| ||| Sbjct 3380 GCATTGAAGAGGGTGGGCGAGGCGTGGGTGAAGTACTTCTCCGACATGAGGTTGTAAGTG 3321 Query 23807 TCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTAT 23866 |||||||| ||||||||| ||||| || |||| |||||| ||||| | ||| | | Sbjct 3320 TCGATGGCCTGGTCAATGTCCCGCCCGTGAATGCCGACGGCGACTCGCATGAGCATATGT 3261 Query 23867 TGAGGTCTCTCG 23878 || || |||||| Sbjct 3260 TGCGGCCTCTCG 3249 >seq2181 Length=22295 Score = 206 bits (228), Expect = 2e-48 Identities = 556/837 (66%), Gaps = 35/837 (4%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| |||||||| |||||||| ||||| | || || | ||||| Sbjct 13985 ATCTGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACTGCTGAGGAGATCGACCTT 13926 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||| ||||| | | || || |||| | | ||||| | Sbjct 13925 TCCAAGGACATGCACGACTGGGACAACAAGTTGAACGACAATGAGCGTCACTTTATCAGC 13866 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| ||||| || |||||||| |||||||| | ||||| | Sbjct 13865 CACGTCCTCGCCTTCTTCGCAGCATCAGACGGTATTGTCAACGAGAACCTCGTCGAGCGG 13806 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||| || ||||||| | ||||| ||||||| ||||| || || | || Sbjct 13805 TTTAGTTCGGAGGTGCAAGCAGCAGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATG 13746 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || | || || || |||||||| || ||| | ||| | | Sbjct 13745 GAGAACATTCACTCGGAGACATACTCTCTGCTCATCGACACATACATTCGCGAC--CCTC 13688 Query 57867 GAGAAACGTAGACTG----TTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AA 57919 || |||| |||| || | || || || || || || | ||| |||| || Sbjct 13687 -AGCAACGC-GACTACCTCTTTGATGCCATGGAGACCATCCCTG---TCGTCAAGCAAAA 13633 Query 57920 GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCT 57976 ||| |||||| | || ||||| || || ||| | | || || || ||| | | Sbjct 13632 GGCCGAGTGGGCCATGCGGTGGATCAA---CGACACCGAATCGACCTTTGCTGAGCGATT 13576 Query 57977 AATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTG 58036 ||||| ||||||||||| || || || ||||| || || |||||| | || || || Sbjct 13575 GATCGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCTGGGTCCTTTGCCTCCATCTTCTG 13516 Query 58037 GATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGA 58096 | | ||||| ||||| || ||||||||||| ||||| ||||||| | || || || Sbjct 13515 GCTCAAGAAGCGCGGTCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCAGCCGAGA 13456 Query 58097 CGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA--ACCG 58154 ||||||||| || || || |||||||||||| | | | ||| | |||| || || Sbjct 13455 CGAGGGTCTGCACACCGACTTTGCGTGCCTACTCTTCAGTCA---TCTCAAGAAGCGCCC 13399 Query 58155 ACGC---GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTT 58211 || | | | ||| ||||| ||| || ||| || ||| | ||||| | | || Sbjct 13398 ACACCCTGAGGTCG--TCTTGCGCATCATTGGCGAAGCTGTCACCATCGAGCAAGCCTTC 13341 Query 58212 GTCACCGAAGCCCTACCGGTGGCCA-TGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270 |||| || || || || || || || |||| |||||| | ||||| | || Sbjct 13340 CTCACTGATGCGCTGCC-ATGTTCATTGATCGGCATGAACGCCCGTCTGATGAGCCAATA 13282 Query 58271 CATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCATTACAACAC 58330 ||| |||||||| |||||| |||| || ||| || ||| || ||||| | Sbjct 13281 CATCGAGTTTGTCGCCGACCGACTGCTGGTCGCCCTCGGCAACGAGAAGCACTACAATGC 13222 Query 58331 GAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTT 58387 || |||||| || || || ||| | ||||| || | || ||||| |||||||| Sbjct 13221 GACAAATCCCTTCGACTTCATGGAGAACATCTCTCTGCAAGGAAAGACTAACTTTTT 13165 >seq2456 Length=10261 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || ||||| ||||||||| |||| || || | Sbjct 1323 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAGGTGGAGTCC 1264 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||| | ||||| || ||| | ||||||||| || | || || || Sbjct 1263 TCCGACACCATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAGGGGATCCCCCCGGA 1205 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||| || || || || || |||||| | || ||| ||| ||||||| || Sbjct 1204 CCAGCAGCGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGACGGACGCTGAGCGACTA 1145 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || || || ||||||||||| ||| Sbjct 1144 CAACATCCAGAAGGAGAGCACCCTTCATCTGGTCCTT 1108 >seq580 Length=47424 Score = 111 bits (122), Expect = 1e-19 Identities = 171/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || ||||||||| |||| || || | || Sbjct 27534 CATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTC 27593 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||| | ||||| || ||| | ||||||||| || | || || |||| Sbjct 27594 CGACACGATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAGGGAATCCCCCCGGACC 27652 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || ||||| ||||| ||| | || ||| ||| | || || | Sbjct 27653 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACA 27712 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGC 31426 |||| || || || ||||| || || || || ||| | ||| | || ||| |||||| Sbjct 27713 ACATCCAGAAGGAGTCGACCCTCCACCTCGTGCTTCGCCTGCGTGGTGGTGCCAAGAAGC 27772 Query 31427 G 31427 | Sbjct 27773 G 27773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445750307832960