Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2181 161 1e-34 seq2399 149 8e-31 >seq2181 Length=22295 Score = 161 bits (178), Expect = 1e-34 Identities = 374/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||||||||||||||||| || || | ||||| || |||||||| Sbjct 13429 CACGCAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTGGAGAACGTGAGG 13488 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || || ||||| || ||||| || ||||| || || || || || |||||| Sbjct 13489 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGACCCAGAGAAGAAG 13548 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCGCTGTCATGT 33758 || || || || || || ||||| || | || ||| || | || || |||| | Sbjct 13549 ATGCCCTCCACGGCGGCGAAGGCGATCAATCGCTCAGCAAAGGTCGATTCGGTGTCGTTG 13608 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||| ||||| |||||||| | || || ||| || || || ||||||| | Sbjct 13609 ATCCACCGCATGGCCCACTCGGCCTTTTGCTTGACGACAGGGATGGTCTCCATGGCATCA 13668 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 ||||| |||| || | | || || || || ||||| | ||| || | Sbjct 13669 AAGAGGTAGTCGCGTTGCTGAGGGTCGCGAATGTATGTGTCGATGAGCAGAGAGTATGTC 13728 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 ||||| |||||||| || || ||||| || |||||||| |||| |||||| | Sbjct 13729 TCCGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCTGCTGCT 13788 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 ||||| || | || ||| || || | | || || || || || || || ||||| Sbjct 13789 TGCACCTCCGAACTAAACCGCTCGACGAGGTTCTCGTTGACAATACCGTCTGATGCTGCG 13848 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGT--TTATTCCA 34054 || || || | || || | ||||| | || | || ||| | | || | ||| Sbjct 13849 AAGAAGGCGAGGACGTGGCTGATAAAGTGACGCTCAT-TGTCGTTCAACTTGTTGTCCCA 13907 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | || || || || | || | || || | ||||| || |||||||||||||| Sbjct 13908 GTCGTGCATGTCCTTGGAAAGGTCGATCTCCTCAGCAGTCCAGAACGATGCCTCTGCCTT 13967 Query 34115 TTTATACATATTCCAGAT 34132 || ||||| | |||||| Sbjct 13968 CTTGTACATTTGCCAGAT 13985 >seq2399 Length=11591 Score = 149 bits (164), Expect = 8e-31 Identities = 382/579 (66%), Gaps = 2/579 (0%) Strand=Plus/Minus Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 || || ||| | || ||||| | |||||||||||||| | | ||||| ||||| || Sbjct 3827 GGGCACTCAGCGGGGCACATGAGCGACCACTCTCCGTTCTGTTCGACTCGCTTCATGAAC 3768 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 | || ||||||||||| || || || || | | | | ||||| || || Sbjct 3767 AAGTCGGGAATCCAAAGGGCGTAGAAGAGCTCACGGGCGCGAACCTCCTCCTTGCCGTGG 3708 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 ||||| | || ||||||||| | | | || || ||||| || || | ||| ||||| Sbjct 3707 TTCTTCCTGAGGTCGAGGAACTCGAAGACGTCCGAGTGCCAAGGCTCAATGTAGATGGCA 3648 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | | || || || ||||| || ||||| || | ||| | ||||||||| || | ||| Sbjct 3647 AAAGCCCCCGGTCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAGACT 3588 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | | ||| |||| ||| ||||| || | || ||||| || | || || || || Sbjct 3587 CGAAGCATGGGAACAATGCCGTTGGAGACGCCGTTGGTTCCAGCAATGTAAGAGCCGGTG 3528 Query 63522 GCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580 | || || | | | || | || || || || || ||| | || ||| | ||||| Sbjct 3527 CCTCGGAT-GCAGTGAATGTTGAGCCCGATGCCACCGGCCGTCTTGCTGATCATGGCGCA 3469 Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640 || | ||||| |||||||| || ||| ||||| |||| | | || || || Sbjct 3468 AGTCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCATCCTTCATCGTGACCAGGAAGCA 3409 Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 | ||||| ||| || | ||||| ||||| || | ||| || || ||||| || || Sbjct 3408 GGATGACATCTGGGGATTGGGTGTTCCGGCATTGAAGAGGGTGGGCGAGGCGTGGGTGAA 3349 Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 | || || || | || ||||| || || || || ||| || |||| ||||| Sbjct 3348 GTACTTCTCCGACATGAGGTTGTAAGTGTCGATGGCCTGGTCAATGTCCCGCCCGTGAAT 3289 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 || || ||||| ||||| | ||| || || || || || Sbjct 3288 GCCGACGGCGACTCGCATGAGCATATGTTGCGGCCTCTC 3250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629794863584640