Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2181 158 2e-33 seq2399 134 2e-26 >seq2181 Length=22295 Score = 158 bits (174), Expect = 2e-33 Identities = 372/557 (67%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || ||| ||| ||||||||||||| || || | |||||||| |||||||| Sbjct 13429 CACGCAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTGGAGAACGTGAGG 13488 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| || || ||||| || ||||| || ||||| ||||| || ||||| ||||| Sbjct 13489 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGACCCAGAGAAGAAG 13548 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCACTGTCATGT 36334 || || || || || || ||||| || | || ||| || | || | |||| | Sbjct 13549 ATGCCCTCCACGGCGGCGAAGGCGATCAATCGCTCAGCAAAGGTCGATTCGGTGTCGTTG 13608 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 |||||| ||||| |||||||| | || || ||| || ||||| || |||| | Sbjct 13609 ATCCACCGCATGGCCCACTCGGCCTTTTGCTTGACGACAGGGATGGTCTCCATGGCATCA 13668 Query 36395 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454 ||||| |||| || | | || || ||||| || || | ||| || | Sbjct 13669 AAGAGGTAGTCGCGTTGCTGAGGGTCGCGAATGTATGTGTCGATGAGCAGAGAGTATGTC 13728 Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514 ||||| |||||||| || || || || || |||||||| |||| |||||| | Sbjct 13729 TCCGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCTGCTGCT 13788 Query 36515 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 36574 || || || | || ||| || || | | || || || || || ||||| ||||| Sbjct 13789 TGCACCTCCGAACTAAACCGCTCGACGAGGTTCTCGTTGACAATACCGTCTGATGCTGCG 13848 Query 36575 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTT-TGGTGTTAGT--TTATTCCAA 36631 || || || | || || | ||||| | || || | || | | || | ||| Sbjct 13849 AAGAAGGCGAGGACGTGGCTGATAAAGTGACGCTCATTGTCGTTCAACTTGTTGTCCCAG 13908 Query 36632 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691 || | || || || || | || | || || | ||||| || |||||||||||||| Sbjct 13909 TCGTGCATGTCCTTGGAAAGGTCGATCTCCTCAGCAGTCCAGAACGATGCCTCTGCCTTC 13968 Query 36692 TTATACATATTCCAGAT 36708 || ||||| | |||||| Sbjct 13969 TTGTACATTTGCCAGAT 13985 >seq2399 Length=11591 Score = 134 bits (148), Expect = 2e-26 Identities = 420/648 (65%), Gaps = 2/648 (0%) Strand=Plus/Minus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 || || || ||| | || ||||| | |||||||||||||| | | ||||| ||||| Sbjct 3830 CCGGGGCACTCAGCGGGGCACATGAGCGACCACTCTCCGTTCTGTTCGACTCGCTTCATG 3771 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 || | || ||||||||||| || || | || | || | | ||||| || || Sbjct 3770 AACAAGTCGGGAATCCAAAGGGCGTAGAAGAGCTCACGGGCGCGAACCTCCTCCTTGCCG 3711 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 ||||| | || ||||||||| | | | || | ||||| || || | ||| ||| Sbjct 3710 TGGTTCTTCCTGAGGTCGAGGAACTCGAAGACGTCCGAGTGCCAAGGCTCAATGTAGATG 3651 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | | || || || ||||| || ||||| || | ||| | ||||||||| || | Sbjct 3650 GCAAAAGCCCCCGGTCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAG 3591 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 |||| | ||| |||| ||| || ||||| || ||||| || | || || || Sbjct 3590 ACTCGAAGCATGGGAACAATGCCGTTGGAGACGCCGTTGGTTCCAGCAATGTAAGAGCCG 3531 Query 66312 CTTGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 66370 | | || || | | | || | || || || || || ||| | || ||| | || Sbjct 3530 GTGCCTCGGAT-GCAGTGAATGTTGAGCCCGATGCCACCGGCCGTCTTGCTGATCATGGC 3472 Query 66371 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 66430 ||| || | || || |||||||| || || |||||| |||| | | || || Sbjct 3471 GCAAGTCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCATCCTTCATCGTGACCAGGAA 3412 Query 66431 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 66490 ||| ||||| ||| || ||||| ||||| || | ||| || || ||||| || Sbjct 3411 GCAGGATGACATCTGGGGATTGGGTGTTCCGGCATTGAAGAGGGTGGGCGAGGCGTGGGT 3352 Query 66491 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 66550 || | || || || | || ||||| || || || || ||| || |||| || Sbjct 3351 GAAGTACTTCTCCGACATGAGGTTGTAAGTGTCGATGGCCTGGTCAATGTCCCGCCCGTG 3292 Query 66551 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 66610 ||| || || ||||| ||||| | ||| || || || || || ||| |||| ||| || Sbjct 3291 AATGCCGACGGCGACTCGCATGAGCATATGTTGCGGCCTCTCGGCGACCTTGCCGTTGAT 3232 Query 66611 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 || || || || || | ||| || || || || ||||| || Sbjct 3231 GCGCAGCAGATAAGAGCGCTCGAGAGTCTTGAAGCCGAAGTAGTTCTA 3184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658149039961920