Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2456 98.7 1e-15 seq2114 93.3 4e-14 seq2269 89.7 5e-13 >seq2456 Length=10261 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || || ||||| || ||||||| || | ||| ||||||||||| || ||| | Sbjct 1129 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCGAGCTGTTTTCCGGCAAA 1188 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||| || || ||||| || || || || || || ||||| ||| || || | | Sbjct 1189 GATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTGGTCTTGACGTT 1248 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | ||||||| || ||||||||| | ||| | |||||||||||| | || || || Sbjct 1249 GTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGAC 1308 Query 139753 GAATATTTGCAT 139764 ||| || ||||| Sbjct 1309 GAAGATCTGCAT 1320 >seq2114 Length=91084 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||||| || ||||| | || ||||| ||||| ||||| || || Sbjct 23381 TGGCCACCGCGGAGACGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCC 23322 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | |||||| ||||| || || ||| |||||| || || || || || Sbjct 23321 GAAAGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGG 23262 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| ||| || | | || | ||||| | | || Sbjct 23261 GGAATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCGATGGTGTCTGAAGATTCA 23202 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||| | ||||||||||||| ||| || ||||| || |||||| Sbjct 23201 ACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATA 23151 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || ||| | |||| ||| || Sbjct 23132 ACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCA 23073 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || |||| |||||||| || || || || ||||| || ||||| | Sbjct 23072 AGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGG 23013 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || ||| || | | || | ||||| | | ||| ||||| | ||| | |||||| Sbjct 23012 ATCTTTGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGATGGTCTTG 22953 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||| ||| || ||||| || |||||| Sbjct 22952 CCGGTCAGCGTCTTGACGAAGATCTGCATA 22923 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| ||||| ||||| || ||| Sbjct 18651 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAG 18710 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || ||||| || || ||| ||||||||||||| || || ||||| Sbjct 18711 AGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGA 18770 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | ||||| | || ||| ||| Sbjct 18771 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGAGGACTCGACC 18830 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | ||| | |||||||| || | || || ||| Sbjct 18831 TCGAGGGTAATGGTCTTGCCAGTAAGAGTCTTAACG 18866 >seq2269 Length=80277 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||| || | ||| | || || || || || ||||| || || | Sbjct 52644 CCGCCGCGCAGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAC 52585 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||||||||| || || ||| |||| ||||| || || || ||||| Sbjct 52584 AGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGG 52525 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | ||||||| | ||||||| Sbjct 52524 ATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATCGTGTCGGATGACTCCACC 52465 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||| || | || || || || || ||||| Sbjct 52464 TCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCAT 52418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496046092089600