Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2181 199 6e-46 seq2399 156 6e-33 >seq2181 Length=22295 Score = 199 bits (220), Expect = 6e-46 Identities = 380/557 (68%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||||||||||||||||| || || || |||||||| |||||||| Sbjct 13429 CACGCAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTGGAGAACGTGAGG 13488 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || ||||| || ||||| || ||||| ||||| |||||||| |||||| Sbjct 13489 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGACCCAGAGAAGAAG 13548 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136 || || || || ||||| ||||| | | || ||| || | | | || |||| | Sbjct 13549 ATGCCCTCCACGGCGGCGAAGGCGATCAATCGCTCAGCAAAGGTCGATTCGGTGTCGTTG 13608 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||| ||||| |||||||| | || || ||| || || || ||||||| | Sbjct 13609 ATCCACCGCATGGCCCACTCGGCCTTTTGCTTGACGACAGGGATGGTCTCCATGGCATCA 13668 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| |||| || | | || || || || ||||| | ||| || | Sbjct 13669 AAGAGGTAGTCGCGTTGCTGAGGGTCGCGAATGTATGTGTCGATGAGCAGAGAGTATGTC 13728 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 ||||| |||||||| || || ||||| || |||||||| |||| |||||| | Sbjct 13729 TCCGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCTGCTGCT 13788 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 ||||| || | || ||| || || | | || || || || || ||||| ||||| Sbjct 13789 TGCACCTCCGAACTAAACCGCTCGACGAGGTTCTCGTTGACAATACCGTCTGATGCTGCG 13848 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG-GGTGTTAGT--TTATTCCAA 50433 || || || | || || | ||||| || || ||| || | | || | ||| Sbjct 13849 AAGAAGGCGAGGACGTGGCTGATAAAGTGACGCTCATTGTCGTTCAACTTGTTGTCCCAG 13908 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 || | || || || || | || | || || | ||||| || |||||||||||||| Sbjct 13909 TCGTGCATGTCCTTGGAAAGGTCGATCTCCTCAGCAGTCCAGAACGATGCCTCTGCCTTC 13968 Query 50494 TTATACATATTCCAGAT 50510 || ||||| | |||||| Sbjct 13969 TTGTACATTTGCCAGAT 13985 >seq2399 Length=11591 Score = 156 bits (172), Expect = 6e-33 Identities = 443/678 (65%), Gaps = 2/678 (0%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 ||||| || || || | || ||| | | || || || || | || ||||| | |||| Sbjct 3860 TCGAATTCCTCACCATAGACGTCGGCAAGACCGGGGCACTCAGCGGGGCACATGAGCGAC 3801 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 |||||||| | | | ||||| ||||| || | || ||||||||||| || || Sbjct 3800 CACTCTCCGTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCAAAGGGCGTAGAAG 3741 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 || || | || | | |||||| || || ||||| | || ||||||||| | | Sbjct 3740 AGCTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAACTCGAAG 3681 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 | || || ||||| || || | ||| ||||| | | | |||||||| ||||| || ||| Sbjct 3680 ACGTCCGAGTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCGCTTGTTGCCACCC 3621 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 || || | ||| | ||||||||| || | |||| | ||| |||| ||| || ||||| Sbjct 3620 TGGTCGACGTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAACAATGCCGTTGGAG 3561 Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGACC 80219 || ||||| || | || || || || | || || | | | || | || || Sbjct 3560 ACGCCGTTGGTTCCAGCAATGTAAGAGCCGGTGCCTCGGAT-GCAGTGAATGTTGAGCCC 3502 Query 80220 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 80279 || || || ||| | || ||| | ||||| || | || || |||||||| || Sbjct 3501 GATGCCACCGGCCGTCTTGCTGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATGCCGTC 3442 Query 80280 TATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 80339 ||| ||||| |||| | | || || ||| ||||| ||| || ||||| Sbjct 3441 GATGGAGTCATCCTTCATCGTGACCAGGAAGCAGGATGACATCTGGGGATTGGGTGTTCC 3382 Query 80340 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT 80399 ||||| || | ||| || || ||||| || || | || || |||| || ||||| || Sbjct 3381 GGCATTGAAGAGGGTGGGCGAGGCGTGGGTGAAGTACTTCTCCGACATGAGGTTGTAAGT 3322 Query 80400 CTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTG 80459 || || || || || |||| ||||| || || ||||| ||||| | ||| || Sbjct 3321 GTCGATGGCCTGGTCAATGTCCCGCCCGTGAATGCCGACGGCGACTCGCATGAGCATATG 3262 Query 80460 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTT 80519 || || || || ||| |||| || || || || ||||| || | ||| || Sbjct 3261 TTGCGGCCTCTCGGCGACCTTGCCGTTGATGCGCAGCAGATAAGAGCGCTCGAGAGTCTT 3202 Query 80520 AAAACCAAAATAGTTGTA 80537 || || || ||||| || Sbjct 3201 GAAGCCGAAGTAGTTCTA 3184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718242870496320