Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2181 239 7e-58 seq2399 138 2e-27 seq702 123 4e-23 >seq2181 Length=22295 Score = 239 bits (264), Expect = 7e-58 Identities = 397/562 (71%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| || || ||||| | || ||| |||| || Sbjct 13985 ATCTGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACTGCTGAGGAGATCGACCTT 13926 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||| ||||| | |||| || | |||||| | ||||| Sbjct 13925 TCCAAGGACATGCACGACTGGGACAACAAGTTGAACGACAATGAGCGTCACTTTATCAGC 13866 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | |||||||| || | || || || || |||||||| || || || || | Sbjct 13865 CACGTCCTCGCCTTCTTCGCAGCATCAGACGGTATTGTCAACGAGAACCTCGTCGAGCGG 13806 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 || || ||| || || | |||||| ||| ||||| ||||| ||||| ||||| Sbjct 13805 TTTAGTTCG-GAGGTG--CAAGCAGCAGAGGC-TCGATGCTTCTACGGCTTCCAGATCAT 13750 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | |||||||| | |||||| || || |||| ||||||||||| || Sbjct 13749 GATGGAGAACATTCACTCGGAGACATACTCTCTGCTCATCGACACATACATTCGCGACCC 13690 Query 125315 ---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAAA 125370 |||||| | || |||||| | || || || || | || ||| | | |||| Sbjct 13689 TCAGCAACGCGACTAC---CTCTTTGATGCCATGGAGACCATCCCTGTCGTCAAGCAAAA 13633 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 ||| | |||| || ||||||||| | ||| | | || | | || || || || Sbjct 13632 -GGCCGAGTGGGCCATGCGGTGGATCAACGACACCGAATCGACCTTTGCTGAGCGATTGA 13574 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || ||||||||||| |||||||||||||| || || ||||| ||||||| |||| Sbjct 13573 TCGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCTGGGTCCTTTGCCTCCATCTTCTGGC 13514 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 ||||||||||||| ||||||||||| || ||| | |||||| | || ||||||| Sbjct 13513 TCAAGAAGCGCGGTCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCAGCCGAGACG 13454 Query 125551 AGGGCCTACACTGTGACTTTGC 125572 |||| || ||| |||||||| Sbjct 13453 AGGGTCTGCACACCGACTTTGC 13432 >seq2399 Length=11591 Score = 138 bits (152), Expect = 2e-27 Identities = 314/464 (68%), Gaps = 10/464 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| ||||| Sbjct 3619 CAGGGTGGCAACAAGCGACCGGGGGCTTTTGCCATCTACATTGAGCCTTGGCACTCGGAC 3678 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || |||| | | || ||| ||| || |||| || ||| | || Sbjct 3679 GTCTTCGAGTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGAG 3738 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC-AAC--GACGGTGGC 97052 | || || || || ||| | || || |||||||||||||| ||| ||| |||| | Sbjct 3739 CTCTTCTACGCCCTTTGGATTCCCGACTTGTTCATGAAGCGAGTCGAACAGAACGGAG-- 3796 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | ||| || |||||||||| || |||||||| |||| || || || || Sbjct 3797 -AGTGGTCGCTCATGTGCCCCGCTGAGTGCCCCGGTCTTGCCGACGTCTATGGTGAGGAA 3855 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGC 97171 || |||||| ||| | ||||||| ||||| || || ||| ||| | || Sbjct 3856 TTCGAGGCCCTCTACGAGAAGTACGAGCGCGAGGGTCGTGCTCGCCGCACG-GTCAAGGC 3914 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| || ||| | ||| | || ||| ||| |||||||| | || | ||| | Sbjct 3915 TC-AGAAGCTCTGGTACGCCGTTCTGGAGGCCCAGACGGAGACTGGCAACCCTTTCATGC 3973 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 | |||||||| | | || ||||| ||||| || | |||||||||||| || Sbjct 3974 TTTACAAGGACGCTGCCAACCGCAAGTCGAACCAGAAGAACCTCGGCACCATCAAGAACT 4033 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 | || || |||||||| || |||||||| | ||||||||||| Sbjct 4034 CTAACCTTTGCACGGAGATCATAGAGTACAGCGCTCCGGACGAG 4077 >seq702 Length=46069 Score = 123 bits (136), Expect = 4e-23 Identities = 399/615 (65%), Gaps = 26/615 (4%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||||| ||||| || ||||| | ||| |||||||| || || || ||| Sbjct 26971 TTGCGGAAGAAGATGAGCCCGGCACGGGGACCGCGGAGCGTCTTGTGGGTCGTGGTCGTC 27030 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCA-AT 127220 |||| ||| || ||||| |||||| | |||| | | | || | | || ||| | || Sbjct 27031 ACAACGTCGCAGTACTCGAAGGGGTTCGCGTTGACCTGGGCAGCGA-CGAGTCCGGAGAT 27089 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCT 127280 ||| || || ||| ||| || | ||| | || | ||| ||||| || || | Sbjct 27090 GTGGGCCATGTCGCACATGAGGAGCGAGTTGTTCGCCTTGGCGATCTCGGAGAGACGCTT 27149 Query 127281 ATAGTCCAAGCGCCGAGGATAG--CAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAAT 127338 |||||| || || || ||| | || |||| ||||| ||| | || | | Sbjct 27150 GTAGTCCCAGTCGCGCGGGTAGGCCGACCCA--CCGGAGATGATGAGCTTGGGGCGGTAG 27207 Query 127339 AGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTG 127398 || | || ||||||| || || | ||||||| ||| || || || | |||||| Sbjct 27208 AGGTCCGCGTTCTCGGCGAGCTTCTCGTAGTCGAGGAGACCCGTAGTGGGGTTGACCTTG 27267 Query 127399 TACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT----------GCGGAATC- 127447 ||||| | | | ||| ||| || | ||| | ||| | | || | Sbjct 27268 TACGGGAAGGCCTGGAAGTAGATGGAGGATGCGCTGATGTTCTTCTTGGGGGTGTAAGCG 27327 Query 127448 -CGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 |||| || ||||| || ||||||| || | ||| |||||||| | || ||||| Sbjct 27328 CCGTGGGTGAGGTGACCGCCGTCGGAGAGCTTGAGGCCCATGATGCGCTCGAACGGTTGG 27387 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || | ||| | |||||||||||||| | ||||| | |||||| || ||| || Sbjct 27388 AGGAAGGCGGTGAAGACGGCAAAGTTGGCAGTGGAGCCTGCGTACGGCTGCACATTGACG 27447 Query 127567 CCCCA----TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 ||||| || || || | ||||| || |||| |||||||| | || | Sbjct 27448 CCCCAGATCTTAGG----GTCGAGGTTGAATGCCTTGAGGGCGCGCTGCTGGGTGAGGAT 27503 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGA 127682 |||| ||||| |||||| || || ||||| || ||||| |||||| || Sbjct 27504 CTCGAGCTTGTCGATGTGCTCGTTTCCGCCGTAGTAGCGTGCGCCGGGGAGACCCTCGGA 27563 Query 127683 GTACTTGTTGATGAG 127697 |||||||||| |||| Sbjct 27564 GTACTTGTTGGTGAG 27578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741032447762880