Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2456 93.3 4e-14 seq580 87.8 2e-12 >seq2456 Length=10261 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/211 (71%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 |||||| ||||||||||| || |||||||| || || | || || ||||||| |||| Sbjct 1117 ATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGCGTCCGTCCGTCCTCGAGCT 1175 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 | || ||| | | || | |||||||| ||| || | | ||||||||| || | Sbjct 1176 GTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCT 1235 Query 48642 TCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACC 48699 | ||||| | | || ||||| |||| |||||| ||||| || || || || || Sbjct 1236 TGGTCTTGACGTTGTCG--ATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTGCC 1293 Query 48700 GGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 |||||| || || || || ||||||||| || Sbjct 1294 GGTGAGGGTCTTGACGAAGATCTGCATCTTG 1324 >seq580 Length=47424 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | | | || || ||||||| |||||||| ||| || Sbjct 27726 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGC-CGTCCTCGAGCTGCTTGCCGGCGA 27668 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651 | || | ||||||||| ||| || | | ||||||||| || || ||||| | Sbjct 27667 AGATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGT 27608 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || || || |||| ||||||| ||||| || || || || || ||||| || || Sbjct 27607 TGTCG--ATCGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTT 27550 Query 48712 CACAAAAATCTGCAT 48726 || ||||||||||| Sbjct 27549 GACGAAAATCTGCAT 27535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421236373010888