Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2323 179 6e-41 seq113 170 3e-38 >seq2323 Length=14619 Score = 179 bits (198), Expect = 6e-41 Identities = 179/231 (77%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 16444 TCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGC 16503 || ||||| |||||| || ||||||||||| ||||||||||| || ||||| ||||| || Sbjct 11757 TCACAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCCGCAATCCGCCGTCTCGC 11815 Query 16504 TCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTT 16563 ||||||||||| ||||||||| ||||||| | |||| || |||| || | ||| | Sbjct 11816 ACGTCGTGGTGGTGTCAAGCGTATCTCTGGCCTCATCTACGACGAGACCCGCGGTGTCCT 11875 Query 16564 GAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 ||| |||||||| || |||| |||| ||| | || ||| ||||||||||| || || Sbjct 11876 CAAGCTCTTCCTCGAGTCCGTCATCCGTGACTCAGTCACCTACACCGAGCACGCCAAGCG 11935 Query 16624 TAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||||||||||| ||| | || ||||||| ||| | || || || || || Sbjct 11936 CAAGACTGTCACATCCCTTGACGTCGTCTACGCACTCAAGCGCCAGGGTCG 11986 >seq113 Length=119718 Score = 170 bits (188), Expect = 3e-38 Identities = 182/239 (76%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 16447 CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCG 16506 ||||| |||||| || ||||||||||| ||||||||||| || ||||| ||||| || || Sbjct 80042 CAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCCGCAATCCGCCGTCTCGCACG 79984 Query 16507 TCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAA 16566 |||||| || ||||||||| ||||||| | |||| || |||| |||| ||| | || Sbjct 79983 TCGTGGCGGTGTCAAGCGTATCTCTGGCCTCATCTACGACGAGACCCGTGGTGTCCTCAA 79924 Query 16567 GATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAA 16626 | |||||||| || | || |||| || | || ||| ||||||||||| || || || Sbjct 79923 GCTCTTCCTCGAGTCTGTCATCCGCGACTCCGTCACCTACACCGAGCACGCCAAGCGCAA 79864 Query 16627 GACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATG 16685 |||||||||||| | || ||||||| || | || || || ||||| | | ||| || Sbjct 79863 GACTGTCACCTCTCTCGACGTCGTCTACGCTCTCAAGCGCCAGGGCCGCACGCTTTGTG 79805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072559481384