Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2181 114 1e-20 >seq2181 Length=22295 Score = 114 bits (126), Expect = 1e-20 Identities = 537/843 (64%), Gaps = 31/843 (4%) Strand=Plus/Plus Query 119667 AAAAAATTAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAAAGGATTTGCAGTG 119726 ||||| |||||||| || | ||||| ||||| | ||| || ||||| ||||||| | Sbjct 13165 AAAAAGTTAGTCTTTCCTTGCAGAGAGATGTTCTCCATGAAGTCGAAGGGATTTGTCGCA 13224 Query 119727 TTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACAAACTCGATGTAT 119786 ||| | ||||| |||| ||| | ||| || |||||| || || ||||||||||||||| Sbjct 13225 TTGTAGTGCTTCTCGTTGCCGAGGGCGACCAGCAGTCGGTCGGCGACAAACTCGATGTAT 13284 Query 119787 TCGCACATGGATTGCGAATTCATGCCCAACATAGCGACCGGTAAAGCATTGGTAAAGAAA 119846 | || ||| | | |||||||| | || | || | |||| || | ||| Sbjct 13285 TGGCTCATCAGACGGGCGTTCATGCCGATCAATGAACATGGCAGCGCATCAGTGAGGAAG 13344 Query 119847 TCCTTTTCAATGTCGACCGCTTCTACAAACATACTCAACACCTTGGTCTTGGAGAGCTTG 119906 | | || ||| ||| ||||| ||| || | ||| || | || | | | | Sbjct 13345 GCTTGCTCGATGGTGACAGCTTCGCCAATGATGCGCAAGAC---GACCTCAGGGTGTGGG 13401 Query 119907 TTCTTTTCGGGAATATATTTATTGTAGTATAGACAAGCAAAGTCGGTGTGTAGTCCTTCG 119966 ||| | | || | | || || ||| || |||||||||||||| || || ||| Sbjct 13402 CGCTTCTTGAGA------TGACTGAAGAGTAGGCACGCAAAGTCGGTGTGCAGACCCTCG 13455 Query 119967 TCTCTGGAAATGAGTTCGTTGCTGTAAGTCAAGCCGGGTA-GAGCTCCTTTTTTCGAGTC 120025 |||| | ||||| |||||| | | || | |||||| | ||| || ||| Sbjct 13456 TCTCGGCTGATGAGCTCGTTGGAGAACGTGAGGCCGGGCATGAG-ACCGCGCTTC----- 13509 Query 120026 TTTGATATAGTAGATTGCAGCAAAACTACCAGaaaaaaaGACGCCTTCGACGATAGCAAA 120085 |||| || |||| | ||||| ||||| || |||| ||| || ||| || || Sbjct 13510 -TTGAGCCAGAAGATGGAGGCAAAGGACCCAGAGAAGAAGATGCCCTCCACGGCGGCGAA 13568 Query 120086 AGCGACCATGCGTTCGGCGAATGTGGCAGATT-GATTT--TCGATCCATTTTTGAGCCCA 120142 |||| || || || || || || |||| | | | | |||||| ||||| Sbjct 13569 GGCGATCAATCGCTCAGCAAA---GGTCGATTCGGTGTCGTTGATCCACCGCATGGCCCA 13625 Query 120143 AGCCGCCTTCTGCTTGACACTATCTATATGCTCGATCGCATTCAAAATCCTGTCGCATTC 120202 | ||||| |||||||| | || ||| || |||| || | ||||| || Sbjct 13626 CTCGGCCTTTTGCTTGACGACAGGGATGGTCTCCATGGCATCAAAGAGGTAGTCGCGTTG 13685 Query 120203 TTGGGGATCTTTAATGTAT---TCGACGACAAGAATGTTATACATTTCCGTGTGAACACA 120259 || || || ||||||| |||| || ||| | || | |||| ||||| Sbjct 13686 CTGAGGGTCGCGAATGTATGTGTCGATGAGCAGAGAG---TATGTCTCCGAGTGAATGTT 13742 Query 120260 CTCAATGAATGTCTGTTGCGCATAGAAAAAACTAGCTTCCAATTCGGGCACGGCGGATTG 120319 ||| || | |||| | ||||| | | ||| || | | |||| | || Sbjct 13743 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCTGCTGCTTGCACCTCCGAACT 13802 Query 120320 CATGTGCTCGATGATGTTAGTGTTCACGATGACGTCGGCGGCAGCGAAAAACGCGAGAAC 120379 | |||||| || ||| ||| || || |||| | || ||||| || ||||| || Sbjct 13803 AAACCGCTCGACGAGGTTCTCGTTGACAATACCGTCTGATGCTGCGAAGAAGGCGAGGAC 13862 Query 120380 GTGCTTAAGAAAAAATCGTTCTTTATCGTTCAGTTTTTTGTTCCAATCGTCAAAGTCCTT 120439 ||| | | ||| || || || ||||||| || |||| ||| |||| | |||||| Sbjct 13863 GTGGCTGATAAAGTGACGCTCATTGTCGTTCAACTTGTTGTCCCAGTCGTGCATGTCCTT 13922 Query 120440 GGACATGTCGATCTCTTCGACTTTCCAGTGACAAT-CGACCGCTTTCTTGTACGATTGCC 120498 ||| | ||||||||| || | ||||| || || | | || ||||||||| ||||| Sbjct 13923 GGAAAGGTCGATCTCCTCAGCAGTCCAG-AACGATGCCTCTGCCTTCTTGTACATTTGCC 13981 Query 120499 AGA 120501 ||| Sbjct 13982 AGA 13984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478645120287360