Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2269 98.7 8e-16 seq2114 98.7 8e-16 seq2456 96.9 3e-15 >seq2269 Length=80277 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||| || || ||||| || ||||||||||| | | Sbjct 52644 CCGCCGCGCAGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAC 52585 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | || ||||| ||| | || || |||||||||||| ||| Sbjct 52584 AGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGG 52525 Query 16829 ACGCCCTCTTTGTC-GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| ||||| | | ||| | ||| || | | | | |||||| | |||| Sbjct 52524 ATGCCCTCCTTGTCTTGGATCTTGGT-CTTGACGTTGTCAATCGTGTCGGATGACTCCAC 52466 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || || || || || || ||||| |||||||| Sbjct 52465 CTCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCAT 52418 >seq2114 Length=91084 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||| | | ||| | ||||| Sbjct 18210 AGCACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCGTCC 18269 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| ||||| || | || || |||||||||||| || | |||||| ||||| Sbjct 18270 TCAAGTTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCT 18329 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | ||| || | | | | ||||| | || || | ||||||||| Sbjct 18330 TGGATCTTCGTCTTTACGTTGTCGATTGTGTCCGATGATTCAACCTCGAGGGTGATGGTC 18389 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || |||||||| || ||||| || |||||||| Sbjct 18390 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 18421 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| | || ||||| Sbjct 23135 AGGACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCC 23076 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || || || ||||||||| || | |||||| ||||| Sbjct 23075 TCAAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTGTCC 23016 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||| ||| || | | | | ||||| | ||| || | |||||||| Sbjct 23015 TGGATCTTTG--TCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGATGG 22958 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||||||| ||||| || |||||||| Sbjct 22957 TCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 22924 >seq2456 Length=10261 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||| |||||| || |||||||||||| || || ||||| Sbjct 1109 AGGACCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCC 1168 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT-C 16842 || | ||||| || ||| | || |||||||| |||||| || | ||||| |||| | Sbjct 1169 TCGAGCTGTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCC 1228 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | ||| | ||| || | | | | |||||| || |||| || | |||||| || Sbjct 1229 TGGATCTTGGT-CTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGT 1287 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || ||||| || || ||||| || |||||||| ||| Sbjct 1288 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTTG 1324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405073741915120