Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2181 167 3e-36 seq2399 152 7e-32 >seq2181 Length=22295 Score = 167 bits (184), Expect = 3e-36 Identities = 375/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| ||||||||||||| || || | |||||||| |||||||| Sbjct 13429 CACGCAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTGGAGAACGTGAGG 13488 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| || || ||||| || ||||| || ||||| ||||| || ||||| ||||| Sbjct 13489 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGACCCAGAGAAGAAG 13548 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCGCTGTCATGT 32837 || || || || || || ||||| || | || ||| || | || || |||| | Sbjct 13549 ATGCCCTCCACGGCGGCGAAGGCGATCAATCGCTCAGCAAAGGTCGATTCGGTGTCGTTG 13608 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||||| ||||| |||||||| | || || ||| || ||||| || |||| | Sbjct 13609 ATCCACCGCATGGCCCACTCGGCCTTTTGCTTGACGACAGGGATGGTCTCCATGGCATCA 13668 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 ||||| |||| || | | || || ||||| || || | ||| || | Sbjct 13669 AAGAGGTAGTCGCGTTGCTGAGGGTCGCGAATGTATGTGTCGATGAGCAGAGAGTATGTC 13728 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 ||||| |||||||| || || || || || ||||||||||||| |||||| | Sbjct 13729 TCCGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCTGCTGCT 13788 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || || | || ||| || || | | || || || || || ||||| ||||| Sbjct 13789 TGCACCTCCGAACTAAACCGCTCGACGAGGTTCTCGTTGACAATACCGTCTGATGCTGCG 13848 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGT--TTATTCCA 33133 || || || | || || | ||||| | || | || ||| | | || | ||| Sbjct 13849 AAGAAGGCGAGGACGTGGCTGATAAAGTGACGCTCAT-TGTCGTTCAACTTGTTGTCCCA 13907 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 || | || || || || | || | || || | ||||| || |||||||||||||| Sbjct 13908 GTCGTGCATGTCCTTGGAAAGGTCGATCTCCTCAGCAGTCCAGAACGATGCCTCTGCCTT 13967 Query 33194 TTTATACATATTCCAGAT 33211 || ||||| | |||||| Sbjct 13968 CTTGTACATTTGCCAGAT 13985 >seq2399 Length=11591 Score = 152 bits (168), Expect = 7e-32 Identities = 442/678 (65%), Gaps = 2/678 (0%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 ||||| || || || | || | | | || || || || ||| | || ||||| | |||| Sbjct 3860 TCGAATTCCTCACCATAGACGTCGGCAAGACCGGGGCACTCAGCGGGGCACATGAGCGAC 3801 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 |||||||||| | | ||||| ||||| || | || ||||||||||| || || Sbjct 3800 CACTCTCCGTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCAAAGGGCGTAGAAG 3741 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 || || | || | | ||||| || || ||||| | || ||||||||| | | Sbjct 3740 AGCTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAACTCGAAG 3681 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 | || || ||||| || || | ||| ||||| | | | || || || ||||| || ||| Sbjct 3680 ACGTCCGAGTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCGCTTGTTGCCACCC 3621 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 || || | ||| | ||||||||| || | |||| | ||| |||| ||| || ||||| Sbjct 3620 TGGTCGACGTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAACAATGCCGTTGGAG 3561 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGACC 63351 || ||||| || | || || || || | || || | | | || | || || Sbjct 3560 ACGCCGTTGGTTCCAGCAATGTAAGAGCCGGTGCCTCGGAT-GCAGTGAATGTTGAGCCC 3502 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 || || || ||| | || ||| | ||||| || | || || |||||||| || Sbjct 3501 GATGCCACCGGCCGTCTTGCTGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATGCCGTC 3442 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471 || |||||| |||| | | || || ||| ||||| ||| || ||||| Sbjct 3441 GATGGAGTCATCCTTCATCGTGACCAGGAAGCAGGATGACATCTGGGGATTGGGTGTTCC 3382 Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63531 ||||| || | ||| || || ||||| || || | || || || | || ||||| || Sbjct 3381 GGCATTGAAGAGGGTGGGCGAGGCGTGGGTGAAGTACTTCTCCGACATGAGGTTGTAAGT 3322 Query 63532 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63591 || || || ||| || |||| ||||| || || ||||| ||||| | ||| || Sbjct 3321 GTCGATGGCCTGGTCAATGTCCCGCCCGTGAATGCCGACGGCGACTCGCATGAGCATATG 3262 Query 63592 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63651 || || || || ||| |||| ||| || || || || || || | ||| || Sbjct 3261 TTGCGGCCTCTCGGCGACCTTGCCGTTGATGCGCAGCAGATAAGAGCGCTCGAGAGTCTT 3202 Query 63652 AAAACCAAAATAGTTGTA 63669 || || || ||||| || Sbjct 3201 GAAGCCGAAGTAGTTCTA 3184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633609125884800