Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2114 105 6e-18 seq2269 91.5 1e-13 >seq2114 Length=91084 Score = 105 bits (116), Expect = 6e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| |||| || || || || Sbjct 23152 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCA 23211 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| ||| ||| ||||| || || ||||| || |||| Sbjct 23212 GACACCATCGA--CAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACC 23269 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || ||||||||||| || | ||||| | || ||| | || |||| Sbjct 23270 AACAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGTACTCTTTCGGACTACA 23329 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| || || || || || || || || Sbjct 23330 ACATCCAAAAGGAGTCGACACTCCACTTGGTCCT 23363 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| |||| || || || || Sbjct 18421 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCATCG 18362 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || |||||| Sbjct 18361 GACACAATCGACAACGTAAAGACGAAGATCCAAGACAAGGAGGGCATTCCCCCGGACCAA 18302 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| ||| | || || | ||||| | || ||||| Sbjct 18301 CAGCGCCTCATCTTCGCAGGCAAGCAACTTGAGGACGGCCGCACCCTCTCTGACTACAAC 18242 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || || || ||||| Sbjct 18241 ATTCAGAAGGAGTCCACACTCCACTTGGTGCT 18210 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || | ||||| ||||||| || || || Sbjct 18649 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAAGTCGAATCTTCA 18590 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || ||| |||||||| || ||||| || |||| Sbjct 18589 GACACCATTGA--CAATGTCAAGACCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACC 18532 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || || |||||||| || | ||||| | || ||| | || |||| Sbjct 18531 AACAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTCTTTCGGACTACA 18472 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || || ||||| || || || || Sbjct 18471 ACATCCAGAAGGAGTCTACGCTCCACTTGGTCCT 18438 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || |||||| | || || || |||| || |||| || ||||| || ||||| ||||| Sbjct 18865 GTTAAGACTCTTACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCAGACACCATCGA- 18807 Query 25071 TCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTA 25128 || || ||| || ||| ||||| || || ||||| || |||||||| || | | Sbjct 18806 -CAATGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGA 18748 Query 25129 TTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAG 25188 | ||||||||||| || | || || | |||||| | ||| ||||| || ||||| | Sbjct 18747 TCTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAACATCCAAAAGG 18688 Query 25189 AATCCACGCTACATTTAGTGCT 25210 | ||||| || || || || || Sbjct 18687 AGTCCACTCTCCACTTGGTCCT 18666 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || |||||| | ||||| || ||||||| |||| || ||||| || || || ||||| Sbjct 22708 GTTAAGACTCTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCAGATACCATCGAC 22767 Query 25071 TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATT 25130 | ||| || ||| ||||| || || || || || ||||||||||| | || Sbjct 22768 AACGTCAAGACCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAACAGCGTCTCATC 22827 Query 25131 TTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAA 25190 || ||||| || || | || |||| ||||| | ||| ||||| || ||||| || Sbjct 22828 TTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAAAAGGAG 22887 Query 25191 TCCACGCTACATTTAGTGCT 25210 || || || || || || || Sbjct 22888 TCGACCCTCCACTTGGTCCT 22907 >seq2269 Length=80277 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || | ||||| |||| |||||||| || Sbjct 52418 ATGCAGATCTTTGTGAAGACTCTCACAGGCAAGACGATCACCCTCGAGGTGGAGTCATCC 52477 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || || || |||||| Sbjct 52478 GACACGATTGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAA 52537 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||| | || || || || ||||| Sbjct 52538 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGAACGCTGTCGGACTACAAC 52597 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || ||||| || || || Sbjct 52598 ATCCAGAAGGAATCGACCCTGCA 52620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433312747937720