Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2181 199 4e-46 >seq2181 Length=22295 Score = 199 bits (220), Expect = 4e-46 Identities = 388/566 (69%), Gaps = 13/566 (2%) Strand=Plus/Plus Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 || ||||||||||||||| || | ||| |||||||| || | ||| ||| ||| || Sbjct 13425 TAGGCACGCAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTGGAGAACGT 13484 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | || || | || || || ||||||||||| || || || ||||| ||||| || Sbjct 13485 GAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGACCCAGAGAA 13544 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCA-CAATACGTTCGGCAAAATT---TGCGGAAT 93263 || || || |||||||| || || || | |||| || || ||||| | | ||| Sbjct 13545 GAAGATGCCCTCCACGGCGGCGAAGGCGATCAAT-CGCTCAGCAAAGGTCGATTCGG--- 13600 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 | | ||||||| | ||||| ||||| |||| ||| | ||| | || || | Sbjct 13601 TGTCGTTGATCCACCGCATGGCCCACTCGGCCTTTTGCTTGACGACAGGGATGGTCTCCA 13660 Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383 | || | ||| ||||| || || | | | || || |||||||| ||||| | ||||| Sbjct 13661 TGGCATCAAAGAGGTAGTCGCGTTGCTGAGGGTCGCGAATGTATGTGTCGATGAGCAGAG 13720 Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 | || | || || || | |||||||| || ||||| |||||||| |||| ||| | Sbjct 13721 AGTATGTCTCCGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCT 13780 Query 93444 CCG-TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCG 93502 | | || | ||||| || | ||| | ||| ||||| || || ||||| ||||| || Sbjct 13781 CTGCTGCT-TGCACCTCCGAACTAAACCGCTCGACGAGGTTCTCGTTGACAATACCGTCT 13839 Query 93503 GATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC--- 93559 |||||||| || || || | | || | ||||| || ||||| || || | | Sbjct 13840 GATGCTGCGAAGAAGGCGAGGACGTGGCTGATAAAGTGACGCTCATTGTCGTTCAACTTG 13899 Query 93560 TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 || ||||| ||| | || || ||||| |||| || || ||||||| |||||||| Sbjct 13900 TTGTCCCAGTCGTGCATGTCCTTGGAAAGGTCGATCTCCTCAGCAGTCCAGAACGATGCC 13959 Query 93620 TCTGCTTTTTTGTACATATCCCATAT 93645 ||||| || |||||||| | ||| || Sbjct 13960 TCTGCCTTCTTGTACATTTGCCAGAT 13985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556840697325120