Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2181 114 3e-20 seq2391 104 5e-17 >seq2181 Length=22295 Score = 114 bits (126), Expect = 3e-20 Identities = 259/383 (68%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 251566 AAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCA 251625 || || |||| ||| || | ||||||||| |||||||||||||||||| ||||| ||| Sbjct 13165 AAAAAGTTAGTCTTTCCTTGCAGAGAGATGTTCTCCATGAAGTCGAAGGGATTTGTCGCA 13224 Query 251626 TTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATAC 251685 ||||| ||||| | ||| || || || | | ||||| || |||||||| | || Sbjct 13225 TTGTAGTGCTTCTCGTTGCCGAGGGCGACCAGCAGTCGGTCGGCGACAAACTCGATGTAT 13284 Query 251686 TGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAAT 251745 || | |||||| | ||||||||| |||| ||| || | || ||| || ||| Sbjct 13285 TGGCTCATCAGACGGGCGTTCATGCCGATCAATGAACATGGCAGCGCATCAGTGAGGAAG 13344 Query 251746 TCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGC-CAGAGACAGCTT 251804 | | ||| ||| || || || | | || | || | | ||| | | Sbjct 13345 GCTTGCTCGATGGTGACAGCTTCGCCAATGATGCGCAAGAC--GACCTCAGGGTGTGGGC 13402 Query 251805 G-TTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862 | |||| || | | | || | || || |||| | ||||||||||||||| || Sbjct 13403 GCTTCTTGAGATGACTGAAGAGTAGGCACG-CAAAGTCGGTGTGCAGACCCTCGTCTCGG 13461 Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922 ||||||| ||||||||| | ||||| ||||| | || || ||| ||||||||||| Sbjct 13462 CTGATGAGCTCGTTGGAGAACGTGAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAG 13521 Query 251923 ATTGCGCAAAAGGATCCAGAGAA 251945 || | | |||||| |||||||| Sbjct 13522 ATGGAGGCAAAGGACCCAGAGAA 13544 >seq2391 Length=72181 Score = 104 bits (114), Expect = 5e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| |||| ||||| | ||||| ||||| || |||| |||||||| || ||| Sbjct 69770 GGTGAGGACTTGTGCAACTGTCAGTTCTCTCTCGCCTACGGTGCCAAGATTCTCCTGAAC 69711 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| | ||||||||||| |||| || |||||| || | ||| || | Sbjct 69710 ACTGCTACCCTCCGCCTCAAGCGTGGCCACCGCTACGGTCTCTGTGGCCGCAACGGTTCC 69651 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| ||||| || | || || || ||| | | Sbjct 69650 GGCAAGTCCACTCTCATGCGCGCCATCCAGAACGGCCAAGTCGAGGGTTTCCCTTCCCCC 69591 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | || ||| || |||||||| ||||| |||| Sbjct 69590 GACGAGGTCCGCACCTGGTACGTCGAGCACGATCTCGACGGCTCT 69546 Score = 93.3 bits (102), Expect = 9e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 |||||||| || | || ||||| || || |||| || || || || || |||| Sbjct 62614 GGACCCAACGGATCCGGCAAGTCGACGCTCGTCAAGCTCATGGTCGGTGACACGGAGGCA 62555 Query 280239 ACTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 | ||| ||| | | |||||||| |||||| || || | |||||||| |||||||| Sbjct 62554 AA-GAGTGGTGAGGTGTGGAAGCACCCCAACTTGGTCATCGGATACGTCGCCCAGCACGC 62496 Query 280298 TTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 |||||||||||| || | ||| |||||| ||||||| | | ||||| | ||||| || Sbjct 62495 TTTCCACCACATTGACCAGCACTTGGACAAGACTCCTCTCGACTACATGCTCTGGCGTTA 62436 Score = 93.3 bits (102), Expect = 9e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 |||||||| || | || ||||| || || |||| || || || || || |||| Sbjct 68939 GGACCCAACGGATCCGGCAAGTCGACGCTCGTCAAGCTCATGGTCGGTGACACGGAGGCA 68880 Query 280239 ACTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 | ||| ||| | | |||||||| |||||| || || | |||||||| |||||||| Sbjct 68879 AA-GAGTGGTGAGGTGTGGAAGCACCCCAACTTGGTCATCGGATACGTCGCCCAGCACGC 68821 Query 280298 TTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 |||||||||||| || | ||| |||||| ||||||| | | ||||| | ||||| || Sbjct 68820 TTTCCACCACATTGACCAGCACTTGGACAAGACTCCTCTCGACTACATGCTCTGGCGTTA 68761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027798767468808