Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2399 489 3e-133 seq2181 282 8e-71 >seq2399 Length=11591 Score = 489 bits (542), Expect = 3e-133 Identities = 1040/1539 (68%), Gaps = 25/1539 (2%) Strand=Plus/Minus Query 243909 CCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGA 243968 |||| || ||||||||| |||| | ||||||| || ||||| | |||||||||| | Sbjct 4867 CCCGGTCCGCGGCCATGTCAATGATGACCTTCTGCGAGATCTCCCAGACCGTCTTGTACA 4808 Query 243969 TGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGA 244028 | ||||| | || |||| ||| | ||||| | |||||| || | |||| Sbjct 4807 GCGCCTTGATCCGGTCCGGGATCCCGGGCACATTCTGAATCGAGCCGCCATGCGCTATGA 4748 Query 244029 GCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC-AGCGCCTCGACCAGGTGC 244087 | || | ||| | ||||||||||| ||| || | | ||| | || ||| | Sbjct 4747 TCCGGTTCTTCATCTGCTCGTTCCACAG-CCCTTGCTCGACGAGCTCGCGGAGCAGCCAC 4689 Query 244088 CTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGC 244147 ||| || || || ||||| || | |||||| ||||| ||| |||||||| || Sbjct 4688 GGGTTGACGACTTGGAACTCGCCAGCCAGCACACGGCGGGTGTACAGGTTGCTCGTGTAA 4629 Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207 ||||| | || ||| || |||||| ||||| ||| || |||||||| || | Sbjct 4628 GGCTCAAAGCACTCGTTGAAGCCCAGGATCTGACTCGTCGAGGCCGTCGGCATAGGTGCG 4569 Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCC 244267 | || ||| ||||| | |||||| ||| | | ||| ||| ||||||| Sbjct 4568 AGCAACAGCGAGTTCCGGAGACCGTGCGAGGCAATGTTGCGCTTGATCTCAGCCCAGTCC 4509 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 || | | ||| || | | | | || ||||||||| |||| ||| |||||| Sbjct 4508 CAAA-GACCG-------CTGGGGGTA-ACGCACCACATGTCGTACTGGAGCTCGCCCTTG 4458 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTC 244387 ||| | |||| ||||||||| ||| ||||| ||| || ||| |||| || | Sbjct 4457 CTGGCCGGGCAGCCCTCGTATGTCTCGTAGGTCCCGAGCTCCTTGGCAAGCTCGCA-CGA 4399 Query 244388 TCG-TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 ||| || || ||||||| ||||||||||||||||||| |||| | | ||||| Sbjct 4398 TCGCTCAAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTTCTTGGCCTC 4339 Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506 | | | |||| | |||||| |||||||| |||| || || || | || ||||| Sbjct 4338 GGGACTGTCAAAGGCGTAGCCCATGATCATGAATGCGTCTGCGAGACCGTTGACTCCGAT 4279 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 ||||||||| | ||| ||| |||| || | |||| |||||||| ||||| |||| | Sbjct 4278 GCCGATGGGGCGGTGGCGCATGTTCGACTTCTTGGCCTCGGGCACAGGGTAGTAGTTCAC 4219 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626 |||||| | |||||||||||||| || | | ||| ||| ||| || || Sbjct 4218 GTCGATGATCTTGTTGAGGTTGCCACAGACGACCTTGGTGACCTCGTGAAGCTTCTTGAA 4159 Query 244627 GTCGTAC-TCGTAGGGATCCTCGGCGA-TGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 ||| || || | | | | | |||| | || || | ||| || || | Sbjct 4158 GTCATATGTCCTCGTGTTGGTTTGCGAGTCGTAATGGATGTAGG-TCGGC-AGAGCCATA 4101 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 ||||| ||||||||||| || ||||| |||| | |||||| | ||||| ||||| Sbjct 4100 CTGGCAAGGTTGCAGACAGCGACCTCGTCCGGAGCGCTGTACTCTATGATCTCCGTGCAA 4041 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 |||||| | |||||||||||| |||| || || || |||||| |||| |||||| Sbjct 4040 AGGTTAGAGTTCTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCAGCGTCC 3981 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 ||||| |||||||| || || ||||| |||||| | || ||| || |||||| Sbjct 3980 TTGTAAAGCATGAAAGGGTTGCCAGTCTCCGTCTGGGCCTCCAGAACGGCGTACCAGAGC 3921 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCC 244924 | | |||||||||||| | |||||| ||||| |||||| ||| |||||| Sbjct 3920 TTCTGAGCCTTGACCGTGCGGCGAGCACGACCCTCGCGCTCGTACTTCTCGTAGAGGGCC 3861 Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTC 244984 ||||| || || |||| ||| | || ||||||||| || ||||||||||| | Sbjct 3860 TCGAATTCCTCACCATAGACGTCGGCAAGACCGGGGCACTCAGCGGGGCACATGAGCGAC 3801 Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 ||||| ||| | | ||| | || |||||| | |||||| ||||| ||||| | |||| Sbjct 3800 CACTCTCCGTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCAAAGGGCGTAGAAG 3741 Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 || || | || | ||| ||| ||| ||||||||| || || | || || ||| Sbjct 3740 AGCTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAACTCGAAG 3681 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 ||||| |||||| ||||| ||||||| || | || || || ||||||||||| ||| Sbjct 3680 ACGTCCGAGTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCGCTTGTTGCCACCC 3621 Query 245165 TGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTT 245220 ||||| | | | |||||| |||||||| || || | || || |||||||| Sbjct 3620 TGGTCGA----CGTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAACAATGCCGTT 3565 Query 245221 AGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT 245280 ||| ||||||||| || ||||| | ||| |||| | || | | ||| | Sbjct 3564 GGAGACGCCGTTGGTTCCAGCAATGTAAGAGCCGGTGCCTCGGATGCAGTGAATGTTGAG 3505 Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340 || | || ||||| |||| ||| | |||||| |||||| |||||| ||||| Sbjct 3504 CCCGATGCCACCGGCCGTCTTGCTGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATGCC 3445 Query 245341 CTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCT 245400 || ||| ||| |||||| ||| ||| |||||||| |||| |||||| ||||| | Sbjct 3444 GTCGATGGAGTCATCCTTCATCGTGACCAGGAAGCAGGATGACATCTGGGGATTGGGTGT 3385 Query 245401 GCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 | | ||||| || ||||| ||||||||| ||||| Sbjct 3384 TCCGGCATTGAAGAGGGTGGGCGAGGCGTGGGTGAAGTA 3346 >seq2181 Length=22295 Score = 282 bits (312), Expect = 8e-71 Identities = 572/836 (68%), Gaps = 30/836 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || || |||||| || |||||||| ||||| Sbjct 13985 ATCTGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACTGCTGAGGAGATCGACCTT 13926 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA-----GTTT-TTCCTC 42413 ||||||||| | || |||||| || |||||| || || || || Sbjct 13925 TCCAAGGACATGCACGACTGGGACAACAAGTT---GAACGACAATGAGCGTCACTTTATC 13869 Query 42414 AAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACC 42473 | || | || ||||||||||| || || ||||| || ||||| |||||||| | | Sbjct 13868 AGCCACGTCCTCGCCTTCTTCGCAGCATCAGACGGTATTGTCAACGAGAACCTCGTCGAG 13809 Query 42474 AGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCC 42533 |||| | |||||||| ||||| || |||||||||||||||||||| Sbjct 13808 CGGTTTAGTTCGGAGGTGCAAGCAGCAGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 13749 Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGAT 42590 || |||||| | ||||| ||| ||| | ||||||| |||| ||||| | || Sbjct 13748 ATGGAGAACATTCACTCGGAGACATACTCT---CTGCTCATCGACACATACATTCGCGAC 13692 Query 42591 CCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTG-CATCAAGAAGAA 42649 || | || || || || | ||||||||||| || ||||| | ||||| | || Sbjct 13691 CCTCAGCAACGCGACTACCTCTTTGATGCCATGGAGACCAT-CCCTGTCGTCAAGCAAAA 13633 Query 42650 GGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGT 42709 ||| || ||||| | |||||| | |||| | || || | ||| | || | Sbjct 13632 GGCCGAGTGGGCCATGCGGTGGATCAACGACACCGAATCGACCTTTGCTGAGCGATTGAT 13573 Query 42710 AGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT 42769 ||||| ||||||| ||||||||||||||||| || |||| ||||||||||||||||| Sbjct 13572 CGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCTGGGTCCTTTGCCTCCATCTTCTGGCT 13513 Query 42770 CAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACG 42828 |||| || ||| || |||||||| ||||| ||||| ||||| ||||||||| | |||| Sbjct 13512 CAAGAAGCGCGGTCTC-ATGCCCGGCCTCACGTTCTCCAACGAGCTCATCAGCCGAGACG 13454 Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| ||||| | |||||||| ||||| || ||| || || |||| | |||| | Sbjct 13453 AGGGTCTGCACACCGACTTTGCGTGCCTACTCTTC---AGTCATCTCA---AGAAGCGCC 13400 Query 42889 CGAA---GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCC 42945 | | ||| ||| | |||||| || || || |||||| | | |||| Sbjct 13399 CACACCCTGAGGTCGTCTTGCGCATCATTGGCGAAGCTGTCACCATCGAGCAAGCCTTCC 13340 Query 42946 TCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACA 43005 |||| | ||||||| || || ||||||||||| | || ||| || | |||| Sbjct 13339 TCACTGATGCGCTGCCATGTTCATTGATCGGCATGAACGCCCGTCTGATGAGCCAATACA 13280 Query 43006 TCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTC-AGCCGCCTCTACAACACG 43064 || ||| |||||||||| || ||| | | || | || | | |||||| || Sbjct 13279 TCGAGTTTGTCGCCGACCGACTGCTGGTCGCCCTCGGCAACGAGAAG-CACTACAATGCG 13221 Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTT 43120 | ||||||||||| |||||||||||||| || | || ||||| |||||||| Sbjct 13220 ACAAATCCCTTCGACTTCATGGAGAACATCTCTCTGCAAGGAAAGACTAACTTTTT 13165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944305109354880