Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2456 141 2e-28 seq2114 136 9e-27 seq580 131 4e-25 seq2269 123 6e-23 seq2257 98.7 2e-15 >seq2456 Length=10261 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || ||||||| ||||| || || ||||| || |||||| ||||| |||||||| Sbjct 1108 AAGGACCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTC 1167 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 || | |||||||| || ||||| || ||||| || ||||| || || || || Sbjct 1168 CTCGAGCTGTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTC 1227 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 |||||| || | || ||||| || || | ||| || || || ||||| |||||||| Sbjct 1228 CTGGATCTTGGTCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGT 1287 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| || ||||||||||| |||||||| Sbjct 1288 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1320 >seq2114 Length=91084 Score = 136 bits (150), Expect = 9e-27 Identities = 180/246 (73%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 288231 GATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTG 288290 || ||||| ||| || ||||||||||| | || || | || | ||| || || || Sbjct 18181 GAGGATTC-TAC-TGGCCACCGCGGAGACGGAGCACCAAGTGGAGTGTGGACTCCTTCTG 18238 Query 288291 GATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACG 288350 || || ||||| | ||| ||||| ||||| || | ||| || ||||||||||| || || Sbjct 18239 AATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCTGCGAAGATGAGGCG 18298 Query 288351 CTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407 |||||| || ||| || || || || || ||||| |||| || ||||| || || Sbjct 18299 CTGTTG---GTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGTCTTTACGTTGTCGAT 18355 Query 288408 AGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467 | || ||||| || ||||| ||||| ||||| |||||||| ||||||||||| || Sbjct 18356 TGTGTCCGATGATTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGAT 18415 Query 288468 CTGCAT 288473 |||||| Sbjct 18416 CTGCAT 18421 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || ||||| || ||||| | Sbjct 18423 CCACCACGGAGACGGAGGACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAA 18482 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | || || || |||||||| ||||||||||| || ||| Sbjct 18483 AGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTG---GTCCGGG 18539 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| |||||||| || | || || || || || | || ||||| Sbjct 18540 GGAATGCCCTCTTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCTGAAGATTCG 18599 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||||||||| || ||||| ||||||||||| |||||||| Sbjct 18600 ACTTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 18649 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || | || | || || || ||||| || ||||||| | Sbjct 23150 CCACCGCGCAGGCGAAGGACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAG 23091 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || ||||| |||||||| ||||| ||||| || Sbjct 23090 AGCGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGA 23031 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || || | || || || || Sbjct 23030 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACC 22971 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 22970 TCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 22924 Score = 114 bits (126), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||||||||| | || || | || | || || |||||||| || ||||| Sbjct 23381 TGGCCACCGCGGAGACGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCC 23322 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || |||||||| | || || || || ||||||| |||||||| || Sbjct 23321 GAAAGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGG---TCC 23265 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || |||||||| || | || || || || || | || ||| Sbjct 23264 GGGGGAATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCGATGGTGTCTGAAGAT 23205 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 23204 TCAACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 23152 Score = 113 bits (124), Expect = 1e-19 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| || ||||| || || || | || ||||| |||||| Sbjct 22886 TCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAG 22827 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||||||||| ||||| || || || |||||||| || | || ||||| Sbjct 22826 ATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGTCTTGACGTTG 22767 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || ||||| ||||| ||||| ||||| |||||||| ||| Sbjct 22766 TCGATGGTATCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTAAGAGTCTTAACG 22707 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || |||||||| || ||||||| | Sbjct 18651 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAG 18710 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || || ||||||||||| ||||| || Sbjct 18711 AGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGA 18770 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || || | || || || || Sbjct 18771 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGAGGACTCGACC 18830 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| || || ||||| || || |||||||| ||| Sbjct 18831 TCGAGGGTAATGGTCTTGCCAGTAAGAGTCTTAACG 18866 >seq580 Length=47424 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| ||||| || | || || || ||||| || ||||| | Sbjct 27761 CCACCACGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 27702 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| |||||||| || ||| Sbjct 27701 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 27642 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || |||||||| || | || ||||| || || | ||| || || || Sbjct 27641 ATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGAAGACTCCACC 27582 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| || || ||||||||||| |||||||| Sbjct 27581 TCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 27535 >seq2269 Length=80277 Score = 123 bits (136), Expect = 6e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || ||||| || | || ||| || ||||| || ||||| | Sbjct 52644 CCGCCGCGCAGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAC 52585 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || |||||||| | || || || || ||||| ||||||||||| ||| Sbjct 52584 AGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGG 52525 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| || | || ||||| || || | ||| || || || Sbjct 52524 ATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATCGTGTCGGATGACTCCACC 52465 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTT 288479 ||||| ||||||||||| || || |||||||| || || |||||||| ||||| Sbjct 52464 TCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCATGATGTT 52412 >seq2257 Length=17672 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 326123 TTGTACACTTTACCGGTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTT 326181 ||||| ||||| || ||| ||||| | ||| | |||| | ||| |||| || |||| Sbjct 10805 TTGTAAACTTTTGCGTGTTGGAGGCCCAAAATCTCCTTGATGTGCT-TGATCTCGGCGTT 10747 Query 326182 CTTCGTGATGCTTGCCACG---GATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGG 326238 |||| ||||| || || || || ||||||||||| | ||||||||||| | || Sbjct 10746 CTTCATGATG---GCGTCGTGTGAAGCTTCGCGGACGTTAAGCAGTTTTCCACGTAAGGG 10690 Query 326239 GAACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGC 326298 ||||||||| | | ||||| ||||| ||||| || || ||| ||| || || Sbjct 10689 GAACACTCCCCAGTTGTCGCGTCCGACGACGGAAAGACCACCGACAGCAGATGCTTTGGC 10630 Query 326299 GGAATCCCCCTCCGTCAGAATGAGAGTGCA 326328 || || ||||||||||| || || ||||| Sbjct 10629 TGAGTCTCCCTCCGTCAGGATCAGCGTGCA 10600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179610749838064