Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2391 98.7 2e-15 seq2257 93.3 9e-14 >seq2391 Length=72181 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 334128 TCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAAC 334187 || || |||||||||||||| || ||||| || | | || | || ||||| Sbjct 69544 TCAGAGCCGTCGAGATCGTGCTCGACGTACCAGGTGCGGACCTCGTCGGGGGAAGGGAAA 69603 Query 334188 CCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGC 334247 || || | || |||||| || |||||||| ||||| || || || | ||||| | Sbjct 69604 CCCTCGACTTGGCCGTTCTGGATGGCGCGCATGAGAGTGGACTTGCCGGAACCGTTGCGG 69663 Query 334248 CCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATT 334307 ||||| ||||||||||||| |||||||| || || | | ||||||| ||||| Sbjct 69664 CCACAGAGACCGTAGCGGTGGCCACGCTTGAGGCGGAGGGTAGCAGTGTTCAGGAGAATC 69723 Query 334308 TTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 || |||| || || ||||| || | ||| | |||| |||||||| Sbjct 69724 TTGGCACCGTAGGCGAGAGAGAACTGACAGTTGCACAAGTCCTCACC 69770 >seq2257 Length=17672 Score = 93.3 bits (102), Expect = 9e-14 Identities = 149/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 298244 TTGTACACTTTACCGGTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTT 298302 ||||| ||||| || ||| ||||| | ||| | |||| | ||| |||| || |||| Sbjct 10805 TTGTAAACTTTTGCGTGTTGGAGGCCCAAAATCTCCTTGATGTGCT-TGATCTCGGCGTT 10747 Query 298303 CTTCGTGATGCTTGCCACG---GATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGG 298359 |||| ||||| || || || || |||||||| || | ||||||||||| | || Sbjct 10746 CTTCATGATG---GCGTCGTGTGAAGCTTCGCGGACGTTAAGCAGTTTTCCACGTAAGGG 10690 Query 298360 GAACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGC 298419 ||||||||| | | ||||| ||||| ||||| || || ||| ||| || || Sbjct 10689 GAACACTCCCCAGTTGTCGCGTCCGACGACGGAAAGACCACCGACAGCAGATGCTTTGGC 10630 Query 298420 GGAATCCCCCTCCGTCAGAATGAGAGTGCA 298449 || || ||||||||||| || || ||||| Sbjct 10629 TGAGTCTCCCTCCGTCAGGATCAGCGTGCA 10600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102839190682800