Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2181 132 5e-26 seq2114 122 8e-23 seq2456 111 1e-19 seq580 96.9 3e-15 seq2269 91.5 1e-13 >seq2181 Length=22295 Score = 132 bits (146), Expect = 5e-26 Identities = 330/494 (67%), Gaps = 43/494 (9%) Strand=Plus/Minus Query 47084 AAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACG--TC-ACTCTGGCCGAACG 47140 ||||||||||||||||||| || || ||||| | || || || | || || || Sbjct 13635 AAAGGCCGAGTGGGCCATGCGGTGGATC---AACGACACCGAATCGACCTTTGCTGAGCG 13579 Query 47141 TTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATT 47200 |||||||| |||||| ||| |||||| |||||||||| || |||||| | || || Sbjct 13578 ATTGATCGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCTGGGTCCTTTGCCTCCATCTT 13519 Query 47201 TTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAG 47260 | | || | || | ||||||||||||||||| ||||||||| ||| | Sbjct 13518 CTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCAGCCG 13459 Query 47261 AGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAA 47320 |||||| || ||||||||| ||||||| || || || || |||| ||| || Sbjct 13458 AGACGAGGGTCTGCACACCGACTTTGCGTGCCT--------ACTCTTCAGTC-ATCTCAA 13408 Query 47321 GTTGGACGTGCCCAC----------CGTC-AGCGACATGTTTGCCGAAGCCGTCGCCATT 47369 || | |||||| |||| ||| ||| ||| |||||| ||| |||| Sbjct 13407 ----GAAGCGCCCACACCCTGAGGTCGTCTTGCG-CATCATTGGCGAAGCTGTCACCATC 13353 Query 47370 GAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATG 47429 ||| | || || | || || ||||| || || | || |||||||| || Sbjct 13352 GAGCAAGCCTTCCTCACTGATGCGCTGCCATGTTCATTGATCGGCATGAACGCCCGTCTG 13293 Query 47430 ATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT-----TCAGCTA-AAGTAT 47483 ||||| | |||||||| |||||||||||||| ||||| || || || | || | Sbjct 13292 ATGAGCCAATACATCGAGTTTGTCGCCGACCGACTGCTGGTCGCCCTCGGCAACGAGAAG 13233 Query 47484 CCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGC 47543 | | | | | | ||| ||||| ||||| || ||| | ||||| || || | || Sbjct 13232 CACTACA-ATGCGACA-----AATCCCTTCGACTTCATGGAGAACATCTCTCTGCAAGGA 13179 Query 47544 AAGACCAACttttt 47557 ||||| |||||||| Sbjct 13178 AAGACTAACTTTTT 13165 >seq2114 Length=91084 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || || || ||||| ||| Sbjct 23150 CCACCGCGCAGGCGAAGGACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAG 23091 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| ||||| ||| |||| | || || || || || || Sbjct 23090 AGCGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGA 23031 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | || | |||||| | | |||||| Sbjct 23030 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACC 22971 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||||||||| || || || || |||||||| Sbjct 22970 TCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 22924 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | || ||||| ||||| || ||||| || Sbjct 23378 CCACCGCGGAGACGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGAA 23319 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || || ||||||| ||||| || || || || Sbjct 23318 AGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGGGGA 23259 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | | || || Sbjct 23258 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCGATGGTGTCTGAAGATTCAACC 23199 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||||||||| || || || || |||||||| Sbjct 23198 TCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 23152 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| ||||| || ||||| ||| Sbjct 22922 CCACCACGCAGGCGAAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAA 22863 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||| ||| |||| | ||||| || || ||||| Sbjct 22862 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGG 22803 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| |||| |||| ||| || | |||||| Sbjct 22802 ATACCCTCCTTGTCCTGGATCTTGGTCTTGACGTTG-TCGATGGTATCTGAGGACTCGAC 22744 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||| | || |||||||| ||||| || || Sbjct 22743 CTCGAGGGTGATGGTCTTGCCGGTAAGAGTCTTAAC 22708 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| ||||| || ||||| ||| Sbjct 18651 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAG 18710 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || || |||||| || || || || ||||| Sbjct 18711 AGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGA 18770 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | |||||| Sbjct 18771 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGAGGACTCGACC 18830 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||| | || ||||| || ||||| || || Sbjct 18831 TCGAGGGTAATGGTCTTGCCAGTAAGAGTCTTAAC 18865 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||| || | || ||||| || ||||| ||||| || Sbjct 18195 CCACCGCGGAGACGGAGCACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAG 18254 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || || || || ||| |||| | ||||| || || || || Sbjct 18255 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCCGGGGGA 18314 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| ||| ||| | |||| |||| ||||||| || || Sbjct 18315 ATGCCCTCCTTGTCTTGGATCTTCGTCTTTACGTTG-TCGATTGTGTCCGATGATTCAAC 18373 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||||||||| || || || || |||||||| Sbjct 18374 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 18421 >seq2456 Length=10261 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| |||| || ||| || || || ||||||||||| || | Sbjct 1129 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCGAGCTGTTTTCCGGCAAA 1188 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||| | |||||||| || || || || |||||||||||| ||| || ||||| ||| Sbjct 1189 GATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTGGTCTTGACGTT 1248 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| |||||| | ||| || |||| ||| | ||| |||||||| || || || | Sbjct 1249 G-TCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGA 1307 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 1308 CGAAGATCTGCAT 1320 >seq580 Length=47424 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | || | || ||||| || || || ||||| || Sbjct 27764 GCACCACCACGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 27705 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||||| || || ||||| || || ||| |||| | |||||||| || || Sbjct 27704 GAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGG 27645 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || || |||||||||||| ||| || ||||| ||||| ||| ||||| | | ||| Sbjct 27644 GGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGT-CGATCGTGTCGGAAGACTC 27586 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| ||| | ||| || || || || || || || |||||||||||| Sbjct 27585 CACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 27534 >seq2269 Length=80277 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || ||||| | |||| || | || | || || || || || || ||||| || Sbjct 52647 GCACCGCCGCGCAGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCC 52588 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || ||| || || || ||||| || || || |||| | ||||| || || ||| Sbjct 52587 GACAGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGA 52528 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || |||||||||||||| ||| || ||||| |||| || | ||||| | ||| Sbjct 52527 GGGATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTG-TCAATCGTGTCGGATGACTC 52469 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| ||| | ||| ||||| || ||||| || ||||| ||||||||| Sbjct 52468 CACCTCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCATG 52417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475483634421120