Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2399 212 8e-50 seq2181 125 9e-24 >seq2399 Length=11591 Score = 212 bits (234), Expect = 8e-50 Identities = 1122/1758 (64%), Gaps = 59/1758 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 |||||||||||| |||||||||| | ||||| ||||||| |||| | ||||| || Sbjct 4991 CGGAGGTAGTACGTCCCCGTCTTCAACCCCTTCTTCCAGCCATAGAAGTGCATGCTGGT- 4933 Query 115618 AACTTGGAGAGTGTTGGACT-TTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676 || |||| | | | | | || || || ||||| ||||||||| || |||||| Sbjct 4932 AAGTTGGCCAAAGCTCGGCGCTTGCAGATGGATGTTCAGACTTTGGGACTGGCAGATGAA 4873 Query 115677 -GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTC 115735 ||| ||||| ||||| ||||| ||||| | ||||| | ||| ||||| || || Sbjct 4872 AGCG-CCCCGGTCCGCGGCCATGTCAATGATGACCTTCTGCGAGATCTCCCAGACCGTCT 4814 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACC-TGCC 115794 |||| || ||| || || ||||| | | ||| || || ||||| || ||| Sbjct 4813 TGTACAGCGCCTTGATCCGGTCCGGGATCCCGGGCACATTCTGAATCGAGCCGCCATGCG 4754 Query 115795 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 | | || | | |||||| | || ||| || || || ||| || | Sbjct 4753 CT-ATGATCCGGTTCTTCATCTGCTCGTTCCACAGCCCTTGCTCGACGAGCTCGCGGAGC 4695 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 || | ||||| || ||||| || || || || | || | |||| || Sbjct 4694 AGCCACGGGTTGACGACTTGGAACTCGCCAGCCAGCACACGGCGGGTGTACAGGTTGCTC 4635 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| |||||||||||||| ||| |||| ||| || || ||||| || ||||| Sbjct 4634 GTGTAAGGCTCAAAGCACTCGTTGAAGCCCAGGATCTGACTCGTCGAGGCCGTCGGCATA 4575 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034 ||||| | | || ||| |||||||| | |||| ||||| | || Sbjct 4574 GGTGCGAGCAACAGCGAGTTCCGGAGACCGTGCGAGGCAATGTTGCGCTTGATCTCAGCC 4515 Query 116035 CAGTCGTAGTTGA--GCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGG 116092 ||||| | || ||| | | | | || |||| || ||||||| || | | Sbjct 4514 CAGTCCCAAA-GACCGCTGGGGGTAACGCACC-ACATGTCGTACTGGAGCTCGCCCTTGC 4457 Query 116093 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC---GCCAATTCGGA-G 116148 || || | ||||| ||||||| || || || | | |||| || | ||| | | Sbjct 4456 TGGCCGGGCAGCCCTCGTATGTCTCGTA--GGTCC-CGAGCTCCTTGGCAAGCTCGCACG 4400 Query 116149 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCC 116208 |||| || || || ||||| || || ||||| || || || || | ||||||| Sbjct 4399 ATCGC-TCAAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTTCTTGGCC 4341 Query 116209 TCGTCGGAAT--CAAACGCG-AGACGGCACAAA-ATAAATACATCCGCGAGACCTTGGAC 116264 ||| ||| | |||| ||| || | || | || ||| | || |||||||| | ||| Sbjct 4340 TCG--GGACTGTCAAAGGCGTAGCC--CATGATCATGAATGCGTCTGCGAGACCGTTGAC 4285 Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATA 116321 |||| ||| || ||||| || | ||| || ||||| || ||| ||| || || Sbjct 4284 TCCGATGCCGATGGGGCGGTGGCGCATGTTCGACTTCTTGGC---CTCGGGCACAGGGTA 4228 Query 116322 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 116381 | ||| ||||| | | | || || || ||| ||||| |||| || ||||| Sbjct 4227 GTAGTTCACGTCGATGATCTTGTTGAGGTTGCCACAGACGACCTTGGTGACCTCGTGAAG 4168 Query 116382 CTTTTCGTAATCAAAACT--------------GCGAGTCTCTTCATTGACATACTTAGGA 116427 ||| | | | ||| | | ||||||| | || || || | || Sbjct 4167 CTTCTTGAAGTCATATGTCCTCGTGTTGGTTTGCGAGTCG--TAATGGATGTAGGTCGGC 4110 Query 116428 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 116487 || || || || || || || |||| | ||| ||| | | |||||||||| || Sbjct 4109 AGAGCCATACTGGCAAGGTTGCAGACAGCGACCTCGTCCGGAGCGCTGTACTCTATGATC 4050 Query 116488 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 116547 ||||| || | || || |||| |||||||| | |||||| || || ||||| ||| Sbjct 4049 TCCGTGCAAAGGTTAGAGTTCTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTG 3990 Query 116548 CACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 116607 || |||||||| ||||| | || | || |||||||| |||| || |||| || Sbjct 3989 GCAGCGTCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCCGTCTGGGCCTCCAGAACGGCG 3930 Query 116608 TTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGT 116666 | ||| | | || | | || | || ||| | || || ||||| ||||||||| Sbjct 3929 TACCAGAGCTTCTGAGCCTTG-ACCGTGCGGCGAGCACGACCCTCGCGCTCGTACTTCTC 3871 Query 116667 GTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGAC 116725 |||||||||||| || || ||||| | || | || | || || || || | | || | Sbjct 3870 GTAGAGGGCCTCGAATTCCTCACC-ATAGACGTCGGCAAGACCGGGGCACTCAGCGGGGC 3812 Query 116726 AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 116785 | | ||| ||||| | || || || || ||||||||||| | ||| || ||||| | Sbjct 3811 ACATGAGCGACCACTCTCCGTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCAAA 3752 Query 116786 GCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 116845 | || ||||||| || || |||| | || || | || || || | | || | Sbjct 3751 GGGCGTAGAAGAGCTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGA 3692 Query 116846 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC--TTGC- 116902 || || | || |||| |||||| || || | ||| | || | | |||| | || Sbjct 3691 GGAACTCGAAGACGTCCGAGTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCGCT 3632 Query 116903 -GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATG 116961 | | ||| |||||| || || | || || ||| || || |||||||| |||| Sbjct 3631 TGTTG-CCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAACA 3573 Query 116962 ATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGG 117021 || || | || ||| || || || ||| ||| | || ||| || ||| Sbjct 3572 ATGCCGTTGGAGACGCCGTTGGTTCCAGCAATGTAAGAGCCGGTGCCTCGGATGCAGTGA 3513 Query 117022 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCG 117081 |||| | || || || || ||| ||| ||| ||||| | |||| || || Sbjct 3512 ATGTTGAGCCCGATGCCACCGGCCGTCTTGCTGATCATGGCGCAAGTCTTGAGGGTGTCG 3453 Query 117082 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGC 117141 ||||| || ||||| |||||| |||| | | || ||||||||| ||||| || || Sbjct 3452 TAGATGCCGTCGATGGAGTCATCCTTCATCGTGACCAGGAAGCAGGATGACATCTGGGGA 3393 Query 117142 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACAT 117200 | ||||| || || ||||||||||| || | |||||| |||| ||| | | ||||| Sbjct 3392 TTGGGTGTTCCGGCATTGAAGAGGGTGGGCGAGGCGTGGGTGAA-GTACTTCTCCGACAT 3334 Query 117201 CTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCG 117260 | ||| || || | | | | |||||| ||||||||| |||| | ||| || Sbjct 3333 GAGGTTGTAAGTGTCGATGGCCTGGTCAATGTCCCGCCCGTGAATGCCGACGGCGACTCG 3274 Query 117261 CATAAACATGTATTGGGG 117278 ||| | ||| | ||| || Sbjct 3273 CATGAGCATATGTTGCGG 3256 >seq2181 Length=22295 Score = 125 bits (138), Expect = 9e-24 Identities = 188/259 (73%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 127506 TGAAGAGTTC-CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTC 127564 |||||||| ||| ||||| || ||| ||||||||||| ||| |||||| || || Sbjct 13418 TGAAGAGTAGGCAC-GCAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTG 13476 Query 127565 GAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAG 127624 ||||| || || ||||||||||| |||||||| | |||||| || | ||| || Sbjct 13477 GAGAACGTGAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGAC 13536 Query 127625 CCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGG 127684 |||||||||||||| |||||||| ||||| || | | ||||| ||||||| || Sbjct 13537 CCAGAGAAGAAGATGCCCTCCACGGCGGCGAAGGCGATCAATCGCTCAGCAAAGG-TCGA 13595 Query 127685 GACTTTGT-ATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGA-TACATGGGACGG 127742 | ||| | | |||| ||| ||||||| ||||||| || || ||| |||| || Sbjct 13596 TTCGGTGTCGTTGATCCACCGCATGGCCCACTCGGCCTTTTGCTTGACGACA-GGGATGG 13654 Query 127743 TCTGGATCGCTTCAAAGAG 127761 ||| || || |||||||| Sbjct 13655 TCTCCATGGCATCAAAGAG 13673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613485052390080