Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2399 159 6e-34 seq2181 127 3e-24 >seq2399 Length=11591 Score = 159 bits (176), Expect = 6e-34 Identities = 450/681 (66%), Gaps = 14/681 (2%) Strand=Plus/Minus Query 203846 ACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTT 203905 ||||||||||| || || || | ||||||| | | | || |||||| | || ||||| Sbjct 5027 ACCGTGAACTGGATCGCATTGGCCGCAGGCCGGGTCCGGAGGTAGTACGTCCCCGTCTTC 4968 Query 203906 AGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCC 203965 | ||||||| ||| || || | ||||||| | |||| || | | | || | | Sbjct 4967 AACCCCTTCTTCCAGCCATAGAAGTGCATGCTGGTAAGTTGGCCAAAGCTCGGCGCTTGC 4908 Query 203966 ATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTG 204025 | || ||||||||| ||| ||| |||||||| |||| || |||||||| | Sbjct 4907 AGATGGATGTTCAGACTTTGGGACTGGCAGATGAAAGCGCCCCGGTCCGCGGCCATGTCA 4848 Query 204026 ATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTGTTGAGG 204084 || ||| ||||||||| |||||||| ||||||||| ||| || || || | | | || Sbjct 4847 ATGATGACCTTCTGCGAGATCTCCCAGACCGTCTTGTACAGCGCCT-TGATCCGGTCCGG 4789 Query 204085 CACATCTTCC---CACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCT 204140 | | || ||| | ||| ||||||||| | || || | | || || ||| Sbjct 4788 GA----TCCCGGGCACATTCTGAATCGAGCCGCCATGCGCTATGATCCGGTTCTTCATCT 4733 Query 204141 CCTCCCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199 ||| ||||| |||| || || ||||| || | ||| ||||||| || || Sbjct 4732 GCTCGTTCCACA-GCCCTTGCTCGACGAGCTCGCGGAGCAGCCACGGGTTGACGACTTGG 4674 Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259 || || || | |||||| | |||||| |||||||| | ||| | || || || |||| Sbjct 4673 AACTCGCCAGCCAGCACACGGCGGGTGTACAGGTTGCTCGTGTAAGGCTCAAAGCACTCG 4614 Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319 ||| ||| | |||||| || |||||| ||||| || || || | ||| ||||| Sbjct 4613 TTGAAGCCCAGGATCTGACTCGTCGAGGCCGTCGGCATAGGTGCGAGCAACAGCGAGTTC 4554 Query 204320 CGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGT 204379 || | ||||| | ||||||| | | |||||| | | ||||| Sbjct 4553 CGGAGACCGTGCGAGGCAATGTTGCGCTTGATCTCAGCCCAGTCCCAAAGACCGCTGGGG 4494 Query 204380 TTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTC 204439 | |||| |||||||||| |||| | ||| | ||| | |||| ||||| ||| ||| Sbjct 4493 GTAACGCACCACATGTCGTACTGGAGCTCGCCCTTGCTGGCCGGGCAGCCCTCGTATGTC 4434 Query 204440 GGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATG-GCGTGATAGTACAT 204498 || | | ||| | || |||| |||||| || || | ||| | ||| || Sbjct 4433 TCGTAGGTCCCGAGCTCCTTGGCAAGCTCGCACGA-TCGCTCAAGAGCGGCGTGGTAGAT 4375 Query 204499 GGTCTCAAAGATCTGAACGTT 204519 |||||| |||||||||| ||| Sbjct 4374 GGTCTCGAAGATCTGAATGTT 4354 Score = 120 bits (132), Expect = 5e-22 Identities = 471/727 (65%), Gaps = 14/727 (2%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| | |||||| ||||| | |||| | ||| | || | | || |||||| || Sbjct 4059 CTCTATGATCTCCGTGCAAAGGTTAGAGTTCTTGATGGTGCCGAGGTTCTTCTGGTTCGA 4000 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 ||||||||| | ||||||||| | |||||| || | || ||||| |||| | Sbjct 3999 CTTGCGGTTGGCAGCGTCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCCGTCTGGGCCTC 3940 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACT-TGCTTCACGTACATCCCTTGAGACT 205061 ||||| | | ||| | | |||||| || ||| | | || |||| | | || Sbjct 3939 CAGAACGGCGTACCAGAGCTTCTGAGCCTTGACCGTGCGGCGAGCACGACCCTCGCG-CT 3881 Query 205062 CGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATT 205121 |||| || ||| || ||| | || || ||| || ||||| || || || || | Sbjct 3880 CGTACTTCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCGGGGCACT 3821 Query 205122 TTTTGGGACACATCAGAGACCACA-TCTGATCGTCTTTCACCCTCTCCATAAACAGGTCG 205180 ||| ||||| || |||||| || | || | || || | || ||| |||| |||| Sbjct 3820 CAGCGGGGCACATGAGCGACCACTCTCCGTTC-TGTTCGACTCGCTTCATGAACAAGTCG 3762 Query 205181 CTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTT 205240 ||||| ||| |||| || || |||||||| | || | || | || ||||||| Sbjct 3761 GGAATCCAAAGGGCGTAGAAGAGCTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTC 3702 Query 205241 TTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGC 205299 | | ||| || || || | | ||| | |||||| ||||| | | | ||| | || Sbjct 3701 CTGAGGTCGAGG-AACTCGAAGACGTCCGAGTGCCAAGGCTCAATGTAGATGGCAAAAGC 3643 Query 205300 GCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAG 205359 || || | |||||| ||||||||||| || ||||| | |||||| ||||| || Sbjct 3642 CCCCGGTCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAGACTCGAAG 3583 Query 205360 CATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCT 205419 ||| || || | ||||||| | ||||| || | ||| ||||| ||| Sbjct 3582 CATGGGAACAATGCCGTTGGAGACGCCGTTGGTTCCAGCAATGTAAGAGCC--GGTGCCT 3525 Query 205420 CACGTTGGAG---ATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC-ACT 205475 | | || || ||| || || || || | |||| |||| ||||| | | Sbjct 3524 C-GGATGCAGTGAATGTTGAGCCCGATGCCACCGGCCGTCTTGCTGATCATGGCGCAAGT 3466 Query 205476 CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACG 205535 |||| || ||| ||||||||| ||||||| || ||| || || ||||| |||| | Sbjct 3465 CTTG-AGGGTGTCGTAGATGCCGTCGATGGAGTCATCCTTCATCGTGACCAGGAAGCAGG 3407 Query 205536 AAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGC 205595 | | || || || | | || || || | |||||| ||||| ||||||| ||||| Sbjct 3406 ATGACATCTGGGGATTGGGTGTTCCGGCATTGAAGAGGGTGGGCGAGGCGTGGGTGAAGT 3347 Query 205596 GCTTCTC 205602 |||||| Sbjct 3346 ACTTCTC 3340 >seq2181 Length=22295 Score = 127 bits (140), Expect = 3e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || || ||||||||||||||| |||||| |||||||| || ||||| ||||||||| Sbjct 13420 AAGAGTAGGCACGCAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTGGAG 13479 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | ||||||| ||||||| || ||| |||||||| || |||| ||||| | || Sbjct 13480 AACGTGAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGACCCA 13539 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| ||||||||||| || || || | | | |||| |||| | | | | Sbjct 13540 GAGAAGAAGATGCCCTCCACGGCGGCGAAGGCGATCAATCGCTCAGCAAAGGTCGATTCG 13599 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTT 160128 ||||| | | |||||| ||||||| || ||||| Sbjct 13600 GTGTCGTTGATCCACCGCATGGCCCACTCGGCCTT 13634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795126494897280