Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2114 150 2e-31 seq580 138 1e-27 seq2456 127 2e-24 seq2269 127 2e-24 >seq2114 Length=91084 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| || | ||| |||||||||||| |||||||| || ||||| || | Sbjct 23367 ACGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTACGGCC 23308 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||||||||| || ||||||||||| ||||| | || | || |||||| Sbjct 23307 GTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTT 23248 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| |||||| | | | ||||| ||||| || || | ||||| Sbjct 23247 GTCCTGGATCTTTGTCTTGACATTGTCGATGGTGTCTGAAGATTCAACCTCGAGGGTGAT 23188 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| |||||||| || || ||||| ||||| Sbjct 23187 GGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 23152 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || ||||| || |||| |||||||||||||||||||| Sbjct 18458 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAA 18517 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||| | || | || ||| |||||| |||||| |||||| | Sbjct 18518 GATGAGACGCTGTTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTTGGTCTTGACATT 18577 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| ||||| || || | |||||| || ||||| ||||| || || || Sbjct 18578 GTCAATGGTGTCTGAAGATTCGACTTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGAC 18637 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 18638 GAAGATCTGCAT 18649 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || |||||||| |||||||| Sbjct 23115 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAA 23056 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||| | ||| | || |||||||||| |||||| |||||| | Sbjct 23055 GATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATT 22996 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | |||||||| ||||| |||||||| || || Sbjct 22995 GTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGAC 22936 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 22935 GAAGATCTGCAT 22924 Score = 113 bits (124), Expect = 5e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| || ||||| |||| || |||||||||||||| || Sbjct 18686 CTCCTTTTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAA 18745 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || || ||||| | || | || |||||||||| |||||| |||||| | Sbjct 18746 GATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATT 18805 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | || ||||| ||||| || || || ||||| Sbjct 18806 GTCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGTAAGAGTCTTAAC 18865 Score = 107 bits (118), Expect = 2e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| || ||||| | || || |||||||| |||||||| Sbjct 22887 CTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAA 22828 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||| | || | | |||||||||| |||||| |||||| ||| Sbjct 22827 GATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGTCTTGA-CGT 22769 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || || || || || || | |||||||| ||||| || || || |||| Sbjct 22768 TGTCGATGGTATCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTAAGAGTCTTAA 22709 Query 46581 C 46581 | Sbjct 22708 C 22708 >seq580 Length=47424 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| |||| |||||||||||||||||||| Sbjct 27726 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 27667 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| |||||| |||||| ||| Sbjct 27666 GATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGT 27608 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| || ||||| || | ||||| || || ||||| || || || | Sbjct 27607 TGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 27548 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 27547 CGAAAATCTGCAT 27535 >seq2456 Length=10261 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || |||||||| ||||| ||||||||| || || || |||| ||| Sbjct 1112 ACCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCG 1171 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| || ||||| || || | ||||||||||| | || | | |||||||||| | Sbjct 1172 AGCTGTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGG 1231 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||||| ||| | | | |||||| || ||||| || | ||||| || || Sbjct 1232 ATCTTGGTCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTT 1290 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| || || || || || ||||| ||||| ||| Sbjct 1291 GCCGGTGAGGGTCTTGACGAAGATCTGCATCTTG 1324 >seq2269 Length=80277 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || || || |||| ||||||||||||||||| || Sbjct 52608 TCCTTCTGGATGTTGTAGTCCGACAGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAG 52549 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| ||||| | || | || ||||||||| |||||| |||||| ||| Sbjct 52548 ATGAGACGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTGGTCTTGA-CGTT 52490 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||||| || ||||| || | ||||| || ||||| || || || || || Sbjct 52489 GTCAATCGTGTCGGATGACTCCACCTCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCAC 52430 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 52429 AAAGATCTGCAT 52418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565217994893760