Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2181 358 7e-94 seq2114 143 3e-29 seq2456 138 1e-27 seq2269 132 5e-26 seq580 131 2e-25 >seq2181 Length=22295 Score = 358 bits (396), Expect = 7e-94 Identities = 581/824 (71%), Gaps = 18/824 (2%) Strand=Plus/Plus Query 132627 CTCaaaaaaa-TTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGG 132685 |||| ||||| ||||| ||||| | || || ||| | ||| || || ||||| || | Sbjct 13160 CTCACAAAAAGTTAGTCTTTCCTTGCAGAGAGATGTTCTCCATGAAGTCGAAGGGATTTG 13219 Query 132686 CTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACT 132742 | ||||||||||| | |||||| || |||| ||||| | |||||| || |||| Sbjct 13220 TCGCATTGTAGTGCTTCTCGTTGCCGA---GGGCGACCAGCAGTCGGTCGGCGACAAACT 13276 Query 132743 CGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCG 132801 |||||||||| ||| | || | || | || | | || |||||||| || Sbjct 13277 CGATGTATTGGCTCATCAGACGGGCGTTCATGCCGATCA-ATGAACATGGCAGCGCATCA 13335 Query 132802 GTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCG 132861 ||||| ||| ||||||||||| ||| || ||| | ||| | ||| | | | | Sbjct 13336 GTGAGGAAGGCTTGCTCGATGGTGACAGCTTCGCCAATGATGCGCAAGACGACCTCAGGG 13395 Query 132862 CTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCG 132921 || || | | | ||| |||| | | ||| ||||||||| |||| |||||| Sbjct 13396 TGTGGGCGCTTCTTGAGATGACTGAAGAGTAGGCACGCAAAGTCGGTGTGCAGACCCTCG 13455 Query 132922 TCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGC 132981 || | | ||||| |||||| ||| || | |||||||||||| ||||| || |||||| Sbjct 13456 TCTCGGCTGATGAGCTCGTTGGAGAACGTGAGGCCGGGCATGAGACCGCGCTTCTTGAGC 13515 Query 132982 CAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041 || || |||| ||| || || || ||||||| |||||| ||||| ||||| || | | Sbjct 13516 CAGAAGATGGAGGCAAAGGACCCAGAGAAGAAGATGCCCTCCACGGCGGCGAAGGCGATC 13575 Query 133042 AGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTT 133101 | ||||| | || || | ||| || | |||||| |||| ||||| ||||||||| Sbjct 13576 AATCGCTCAGCAAAGGTCGATTCGGTGTCGTTGATCCACCGCATGGCCCACTCGGCCTTT 13635 Query 133102 TCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAA 133161 | |||||| || || || || ||||| |||| | | | ||| | | | |||| Sbjct 13636 TGCTTGACGACAGGGATGGTCTCCATGGC-ATCAA-AGAGGTAGTCGCGTTGCTGAGGGT 13693 Query 133162 CGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGA 133219 ||| | ||| ||||||||||| || || | |||||||| | ||||||||| || Sbjct 13694 CGCGAATGTATGTGTCGATGAGCAGAGAGTATGTCTCCGAGTGAATGTTCTCCATCATGA 13753 Query 133220 TTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA-CGCTCG 133278 | || |||||||| ||||| || ||||| | | ||||| || || | ||| |||||| Sbjct 13754 TCTGGAAGCCGTAGAAGCATCGAGCCTCTGCTGCTTGCACCTC-CGAACTAAACCGCTCG 13812 Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 || || || |||||||| || ||||| || ||||| ||||| || ||||| |||| Sbjct 13813 ACGAGGTTCTCGTTGACAATACCGTCTGATGCTGCGAAGAAGGCGAGGACGTGGCTGATA 13872 Query 133339 AAATGGCGCTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395 || || ||||| ||||||||||| | ||||||||| || |||||||||| ||||| Sbjct 13873 AAGTGACGCTCATTGTCGTTCAACTTGTTGTCCCAGTCGTGCATGTCCTTGGAAAGGTCG 13932 Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | |||||| | ||||| ||||| ||||| || || |||||||| Sbjct 13933 ATCTCCTCAGCAGTCCAGAACGATGCCTCTGCCTTCTTGTACAT 13976 >seq2114 Length=91084 Score = 143 bits (158), Expect = 3e-29 Identities = 164/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| ||||||||| |||| |||||| | | Sbjct 22924 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCA 22983 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| ||| |||| ||||| ||||| ||||| | |||| Sbjct 22984 GACACCATTGACAATG--TCAAGACAAAGATCCAGGACAAGGAGGGCATTCCGCCGGACC 23041 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || ||||| | ||| || || ||||| || |||| ||||| ||| |||||||| Sbjct 23042 AACAACGTCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACA 23101 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| |||| || || ||||| || || Sbjct 23102 ACATCCAGAAGGAGTCGACACTCCACTTGGTCCTTCG 23138 Score = 136 bits (150), Expect = 4e-27 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| || || | | Sbjct 18421 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCATCG 18362 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| |||||| || |||| ||||| ||||| |||||| | |||| Sbjct 18361 GACACAATCGACAACG--TAAAGACGAAGATCCAAGACAAGGAGGGCATTCCCCCGGACC 18304 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| | ||| ||||| || || || |||| ||||||||| ||||||| Sbjct 18303 AACAGCGCCTCATCTTCGCAGGCAAGCAACTTGAGGACGGCCGCACCCTCTCTGACTACA 18244 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||| || ||||| | || || || |||||||| ||| | | || |||| Sbjct 18243 ACATTCAGAAGGAGTCCACACTCCACTTGGTGCTCCGTCTCCGCGGTGGCC 18193 Score = 132 bits (146), Expect = 5e-26 Identities = 170/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| ||||||||| |||| || || | | Sbjct 23152 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCA 23211 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| ||| |||| ||||| ||||| |||||| | |||| Sbjct 23212 GACACCATCGACAATG--TCAAGACAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACC 23269 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| | || | || ||||| ||||| || |||| || || || ||||||| Sbjct 23270 AACAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGTACTCTTTCGGACTACA 23329 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||||||||| |||| || || ||||| |||||| | | || |||| Sbjct 23330 ACATCCAAAAGGAGTCGACACTCCACTTGGTCCTGCGTCTCCGCGGTGGCC 23380 Score = 127 bits (140), Expect = 2e-24 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || ||||| |||| ||||| | | Sbjct 18649 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAAGTCGAATCTTCA 18590 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| ||||||||||| |||||| | |||| Sbjct 18589 GACACCATTGACAATG--TCAAGACCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACC 18532 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| | ||| ||||| ||||| || |||| || || || ||||||| Sbjct 18531 AACAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTCTTTCGGACTACA 18472 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| | ||||| || ||||| || ||| Sbjct 18471 ACATCCAGAAGGAGTCTACGCTCCACTTGGTCCTCCGT 18434 Score = 127 bits (140), Expect = 2e-24 Identities = 154/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 38255 CGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA 38314 ||| || || || || ||||| ||||||||| |||| |||||| || | || | | | | Sbjct 22707 CGTTAAGACTCTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCAGATACCATCGA 22766 Query 38315 -AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 |||| | |||| || |||| ||||| ||||| || || | ||||||||||| ||| Sbjct 22767 CAACG--TCAAGACCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAACAGCGTCTC 22824 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | |||||||| ||||||||||||||||||| Sbjct 22825 ATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAAAAG 22884 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCG 38458 || |||| || || ||||| || || Sbjct 22885 GAGTCGACCCTCCACTTGGTCCTTCG 22910 Score = 120 bits (132), Expect = 3e-22 Identities = 153/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 38255 CGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA 38314 ||| || || || || ||||| ||||| ||| |||| |||||| || | |||| | | | Sbjct 18866 CGTTAAGACTCTTACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCAGACACCATCGA 18807 Query 38315 -AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 || | | |||| || |||| ||||| ||||| ||||| | |||||||| || || Sbjct 18806 CAATG--TCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTG 18749 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || |||| ||||| ||| ||||||||||||||||||| Sbjct 18748 ATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAACATCCAAAAG 18689 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || || || ||||| || ||| Sbjct 18688 GAGTCCACTCTCCACTTGGTCCTCCGT 18662 >seq2456 Length=10261 Score = 138 bits (152), Expect = 1e-27 Identities = 167/221 (76%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||| ||||| || |||||| |||| || ||| || Sbjct 1323 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAGGTGGAGTCC 1264 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCG 38358 |||||| | | | |||| | |||| || |||| ||||| ||||| || ||| | | Sbjct 1263 TCCGACACCATCGACAACG--TCAAGACCAAGATCCAGGACAAGGAGGGGATCCCCCCGG 1206 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||||||||| | || || |||||||| || |||| || || || | ||||| Sbjct 1205 ACCAGCAGCGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGACGGACGCTGAGCGACT 1146 Query 38419 ACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||| ||||| ||| || || ||| |||| || || Sbjct 1145 ACAACATCCAGAAGGAGAGC-ACCCTTCATCTGGTCCTTCG 1106 >seq2269 Length=80277 Score = 132 bits (146), Expect = 5e-26 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| || |||||| |||| || ||| | || Sbjct 52418 ATGCAGATCTTTGTGAAGACTCTCACAGGCAAGACGATCACCCTCGAGGTGGAGTCATCC 52477 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || |||| | |||| || |||| ||||| ||||| || || | |||| Sbjct 52478 GACACGATTGACAACG--TCAAGACCAAGATCCAAGACAAGGAGGGCATCCCTCCGGACC 52535 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| | || ||||| ||||| || |||| || || || ||||||| Sbjct 52536 AACAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGAACGCTGTCGGACTACA 52595 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| |||||| |||| ||||| | || |||||| || | ||||| Sbjct 52596 ACATCCAGAAGGAATCGACCCTGCACCTCGTCCTGCGTCTGCGCGGCGG 52644 >seq580 Length=47424 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| |||| || ||| | || Sbjct 27535 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCC 27594 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | | | |||| || |||| ||||| |||||||| ||| | ||||| Sbjct 27595 GACA-CGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCA 27653 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||||| || |||| ||||| || |||||||| Sbjct 27654 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAA 27713 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| |||| || || | ||||| || Sbjct 27714 CATCCAGAAGGAGTCGACCCTCCACCTCGTGCTTCG 27749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500154743761920