Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2399 183 4e-41 seq2181 123 3e-23 >seq2399 Length=11591 Score = 183 bits (202), Expect = 4e-41 Identities = 523/793 (66%), Gaps = 11/793 (1%) Strand=Plus/Plus Query 111621 ATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACA 111680 ||| ||||||| ||||| |||| || || ||| || ||||| | | || || Sbjct 3265 ATGCTCATGCGAGTCGCCGTCGGCATTCACGGGCGGGACATTGACCAGGCCATCGACACT 3324 Query 111681 TACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGG 111739 ||| || ||||| | ||| |||| |||||| | || ||||||||||| || || Sbjct 3325 TACAACCTCATGTCGGAGAAGTAC-TTCACCCACGCCTCGCCCACCCTCTTCAATGCCGG 3383 Query 111740 TACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAA 111799 ||||| | ||||| ||||| || ||||| | | | ||||| || || ||| | Sbjct 3384 AACACCCAATCCCCAGATGTCATCCTGCTTCCTGGTCACGATGAAGGATGACTCCATCGA 3443 Query 111800 TGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGG 111859 ||||| |||| ||| |||| || ||| ||| ||| ||| ||||| ||||| Sbjct 3444 CGGCATCTACGACACCCTCAAGACTTGCGCCATGATCAGCAAGACGGCCGGTGGCATCGG 3503 Query 111860 GATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATC 111919 | | |||| || || ||| || | ||| ||| || || || || || Sbjct 3504 GCTCAACATTCACTGCATCCGAGGCACCGGCTCTTACATTGCTGGAACCAACGGCGTCTC 3563 Query 111920 AGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGC 111979 | || ||| |||| |||||||| || || ||| ||| || ||||| || |||| | Sbjct 3564 CAACGGCATTGTTCCCATGCTTCGAGTCTTCAACAACACCGCTCGCTACGTCGACCAGGG 3623 Query 111980 TGGGCGTC--GCAA--GGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCA 112035 | ||| | || | ||| || | || |||| ||||||| |||||| |||| || Sbjct 3624 T-GGCAACAAGCGACCGGGGGCTTTTGCCATCTACATTGAGCCTTGGCACTCGGACGTCT 3682 Query 112036 TGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCT 112095 | |||||||| || | | ||||| || | ||||||| || ||| || |||| Sbjct 3683 TCGAGTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGAGCTCT 3742 Query 112096 TCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGT 112155 ||| ||| || |||||||| || | ||||||||| |||| || ||| || | |||| Sbjct 3743 TCTACGCCCTTTGGATTCCCGACTTGTTCATGAAGCGAGTCGAACAGAACGGAGAGTGGT 3802 Query 112156 CTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAG 112215 | ||| | || || | || |||||||| |||| | | |||||||| || || | Sbjct 3803 CGCTCATGTGCCCCGCTGAGTGCCCCGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGG 3862 Query 112216 CCCTCTACACAAAGTACGAGGAAGAAAGTCGGGC-GACTGCGACGGTGCCAGCTGCCGAT 112274 |||||||| ||||||||| || |||| || | || ||||| | || | || Sbjct 3863 CCCTCTACGAGAAGTACGAGCGCGAGGGTCGTGCTCGCCGC-ACGGT-CAAGGCTCAGAA 3920 Query 112275 G-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAA 112333 | | ||| | || |||| || | || || |||||||| | || | ||||||||||| Sbjct 3921 GCTCTGGTACGCCGTTCTGGAGGCCCAGACGGAGACTGGCAACCCTTTCATGCTTTACAA 3980 Query 112334 AGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCT 112393 ||||| |||| ||| || || ||||| | || ||||||| || ||||| Sbjct 3981 GGACGCTGCCAACCGCAAGTCGAACCAGAAGAACCTCGGCACCATCAAGAACTCTAACCT 4040 Query 112394 CTGTACAGAAATC 112406 || || || ||| Sbjct 4041 TTGCACGGAGATC 4053 >seq2181 Length=22295 Score = 123 bits (136), Expect = 3e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||||||||||||| | |||| || || || ||||| |||||||||||||| |||| Sbjct 13591 CCTTTGCTGAGCGATTGATCGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCTGGGTCCT 13532 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 | | | || | |||||||||||||| ||||||||||| || ||| |||||||||| Sbjct 13531 TTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTCACGTTCTCCAACG 13472 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 |||| ||| || |||||||| || ||| || |||||| Sbjct 13471 AGCTCATCAGCCGAGACGAGGGTCTGCACACCGACTTTGCG 13431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620719991199360