Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2399 185 1e-41 seq2181 84.2 3e-11 >seq2399 Length=11591 Score = 185 bits (204), Expect = 1e-41 Identities = 603/927 (65%), Gaps = 11/927 (1%) Strand=Plus/Minus Query 110281 GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAA 110340 || ||||| ||| ||||| ||||| |||| |||||| || |||| || | Sbjct 4112 GGCAGAGCCATACTGGCAAGGTTGCAGACAGCGACCTCGTCCGGAGCGCTGTACTCTATG 4053 Query 110341 ATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAG 110400 || ||||| || | ||| || |||| ||| || | ||||||||| ||||| ||| | Sbjct 4052 ATCTCCGTGCAAAGGTTAGAGTTCTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCGG 3993 Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATG 110460 ||| || ||||| || |||||| | ||| | ||||| |||||||| | || |||| | Sbjct 3992 TTGGCAGCGTCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCCGTCTGGGCCTCCAGAACG 3933 Query 110461 GCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTT 110519 || | ||| | | || | | | | || || | ||| |||| || ||||||||| Sbjct 3932 GCGTACCAGAGCTTCTGAGCCTTG-ACCGTGCGGCGAGCACGACCCTCGCGCTCGTACTT 3874 Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGG 110579 ||| | | |||| ||||||| || || || || | |||||| || |||| Sbjct 3873 CTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCGGGGCACTCAGCGGG 3814 Query 110580 ACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCA 110639 || | ||| ||||| | ||| || || || | ||||||||||| ||| |||||||| Sbjct 3813 GCACATGAGCGACCACTCTCCGTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCA 3754 Query 110640 CATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTC 110699 | || |||| || |||||| ||| |||| || | || ||||| | || || Sbjct 3753 AAGGGCGTAGAAGAGCTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTC 3694 Query 110700 CAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG 110759 | || || | || ||||||||||| || || | |||| || | | ||| || Sbjct 3693 GAGGAACTCGAAGACGTCCGAGTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCG 3634 Query 110760 ---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAAT 110816 || |||||| || ||||| || ||| |||||||| | ||||| |||| Sbjct 3633 CTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAAC 3574 Query 110817 AATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTG 110876 ||| || | ||| || || || || ||| || || | || ||| ||| Sbjct 3573 AATGCCGTTGGAGACGCCGTTGGTTCCAGCAATGTAAGAGCCGGTGCCTCGGATGCAGTG 3514 Query 110877 GATATGCATACCAATACCACCCGCCCACTTACTAAT--TTGTGCACACTCTGTGAGTGTA 110934 || | | || || ||||| ||| ||| || || | | ||| | ||| |||| || Sbjct 3513 AATGTTGAGCCCGATGCCACCGGCCGTCTTGCTGATCATGGCGCA-AGTCT-TGAGGGTG 3456 Query 110935 CCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGA 110994 | || || || || || || || |||| | | | || ||||| || |||||||| Sbjct 3455 TCGTAGATGCCGTCGATGGAGTCATCCTTCATCGTGACCAGGAAGCAGGATGACATCTGG 3396 Query 110995 GGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGA 111053 ||| || ||||| ||||||||||| || || | || || |||| || | | || Sbjct 3395 GGATTGGGTGTTCCGGCATTGAAGAGGGTGGGCGAGGCGTGGGTGAA-GTACTTCTCCGA 3337 Query 111054 CATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAAC 111113 ||| |||||| ||||||| || | | || |||||||| || | ||| || Sbjct 3336 CATGAGGTTGTAAGTGTCGATGGCCTGGTCAATGTCCCGCCCGTGAATGCCGACGGCGAC 3277 Query 111114 TCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACT 111173 |||||||| ||||| ||| ||| | ||| | ||| || | | ||| | || ||| Sbjct 3276 TCGCATGAGCATATGTTGCGGCCTCTCGGCGACCTTGCCGTTGATGCGCAGCAGATAAGA 3217 Query 111174 CTTCTCTAGGGTCTTGAGACCAAAGTA 111200 ||| || ||||||| || ||||| Sbjct 3216 GCGCTCGAGAGTCTTGAAGCCGAAGTA 3190 >seq2181 Length=22295 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/133 (74%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||||||||| || ||| || || |||||||| || | ||||| ||||| ||||| Sbjct 13464 GATGAGCTCGTTGGAGAACGTGAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGAT 13523 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 || ||| ||||| ||||||||||||||||| |||||| |||| | ||||| Sbjct 13524 GGAGGCAAAGGACCCAGAGAAGAAGATGCCCTCCACGGCGGCGAAGGCGATCAATCGCTC 13583 Query 119648 AGCAAAAGGTCGA 119660 ||| ||||||||| Sbjct 13584 AGC-AAAGGTCGA 13595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588954737966400