Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2399 190 2e-43 seq2181 87.8 2e-12 >seq2399 Length=11591 Score = 190 bits (210), Expect = 2e-43 Identities = 552/840 (66%), Gaps = 11/840 (1%) Strand=Plus/Minus Query 106478 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAA 106537 ||||| ||||| ||| ||| | | ||||||||| || || || || | ||| || Sbjct 4091 TTGCAGACAGCGACCTCGTCCGGAGCGCTGTACTCTATGATCTCCGTGCAAAGGTTAGAG 4032 Query 106538 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGC 106597 |||| || || || | ||||| ||||| ||| |||| || |||||||| ||| Sbjct 4031 TTCTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCAGCGTCCTTGTAAAGC 3972 Query 106598 ATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGC 106656 ||| | || | || ||||||||||| | || |||| || | ||| | | || | | | Sbjct 3971 ATGAAAGGGTTGCCAGTCTCCGTCTGGGCCTCCAGAACGGCGTACCAGAGCTTCTGAGCC 3912 Query 106657 TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 106716 | | || || | || || ||||| ||||||||| ||||||||| || || || Sbjct 3911 TTG-ACCGTGCGGCGAGCACGACCCTCGCGCTCGTACTTCTCGTAGAGGGCCTCGAATTC 3853 Query 106717 CTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACC 106776 |||||| |||||| ||||| || || | || || | || ||||| | || Sbjct 3852 CTCACCATAGACGTCGGCAAGACCGGGGCACTCAGCGGGGCACATGAGCGACCACTCTCC 3793 Query 106777 ACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 106836 || || || ||||||||||| | ||| |||||||| |||| | ||||| || | Sbjct 3792 GTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCAAAGGGCGTAGAAGAGCTCACG 3733 Query 106837 ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGC 106896 ||| |||| || | || ||||| | | || |||||||| | || |||| Sbjct 3732 GGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAACTCGAAGACGTCCGA 3673 Query 106897 GTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTAC 106953 |||||| ||||||| |||| || | || ||| ||| ||| | || | || Sbjct 3672 GTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCGCTTGTTGCCACCCTGGTCGAC 3613 Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013 ||||| || ||| ||| || || |||||||| |||| ||| || | || || || Sbjct 3612 GTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAACAATGCCGTTGGAGACGCCGTT 3553 Query 107014 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 107073 || || ||| ||| || ||| | || |||| | ||| || || || Sbjct 3552 GGTTCCAGCAATGTAAGAGCCGGTGCCTCGGATGCAGTGAATGTTGAGCCCGATGCCACC 3493 Query 107074 AGCCCACTT--TGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 ||| ||| ||| | ||||| | | | | || || | ||||| |||| ||| ||| Sbjct 3492 GGCCGTCTTGCTGATCATGGCGCA-AGT-CTTGAGGGTGTCGTAGATGCCGTCGATGGAG 3435 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 || ||||| | | || |||||||| |||||||| || | ||||| || |||||| Sbjct 3434 TCATCCTTCATCGTGACCAGGAAGCAGGATGACATCTGGGGATTGGGTGTTCCGGCATTG 3375 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAA 107250 |||||||| || | ||||| |||| ||| | | ||||| || ||| || || | Sbjct 3374 AAGAGGGTGGGCGAGGCGTGGGTGAA-GTACTTCTCCGACATGAGGTTGTAAGTGTCGAT 3316 Query 107251 GACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 | | |||||||| |||||| ||||||| ||| || ||||| | ||| | ||| || Sbjct 3315 GGCCTGGTCAATGTCCCGCCCGTGAATGCCGACGGCGACTCGCATGAGCATATGTTGCGG 3256 >seq2181 Length=22295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| |||||| || || || || ||||| ||||| Sbjct 13432 GCAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTGGAGAACGTGAGGCCG 13491 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||||||||| |||||||| | ||| | || | | || ||||| ||||||||||| Sbjct 13492 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGACCCAGAGAAGAAGATG 13551 Query 117394 CCCTCCAC 117401 |||||||| Sbjct 13552 CCCTCCAC 13559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589959501693120