Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2114 156 9e-33 seq2269 143 6e-29 seq580 129 1e-24 >seq2114 Length=91084 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| || | |||||| | || ||||||||||| Sbjct 18446 GTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCTTCGAGCTG 18505 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || |||||||| || |||||||| |||||||| || || || Sbjct 18506 CTTGCCGGCGAAGATGAGACGCTGTTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATCTT 18565 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || ||||||||||| ||| ||| ||||| || || | |||||| || || Sbjct 18566 GGTCTTGACATTGTCAATGGTGTCTGAAGATTCGACTTCGAGCGTGATCGTCTTGCCAGT 18625 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 18626 CAGGGTCTTGACGAAGATCTGCAT 18649 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| |||| || || | || || || ||||| Sbjct 23127 GTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTG 23068 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || ||||||||||| || |||||||| || ||||| || || || Sbjct 23067 CTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 23008 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| || ||||||||||| ||| || || || ||||| | ||||| || || Sbjct 23007 TGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 22948 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 22947 CAGCGTCTTGACGAAGATCTGCAT 22924 Score = 136 bits (150), Expect = 9e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||| ||||| || ||||| |||| || || | || || || ||||| Sbjct 18674 GTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTG 18733 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || ||||||||||| ||||||||||| || ||||| || || || Sbjct 18734 CTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 18793 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||| || || || || ||||||| ||||| || || Sbjct 18794 GGTCTTGACATTGTCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGT 18853 Query 195117 CAAAGTTTTTACG 195129 | ||| || ||| Sbjct 18854 AAGAGTCTTAACG 18866 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || ||||| ||||| || | || || | || || || || || Sbjct 18218 GTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCAAGTTG 18277 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||||||||| || || |||||||| || |||||||| || |||||||| || || Sbjct 18278 CTTGCCTGCGAAGATGAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTT 18337 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || || |||||||| ||| || || ||||| | ||||| || || Sbjct 18338 CGTCTTTACGTTGTCGATTGTGTCCGATGATTCAACCTCGAGGGTGATGGTCTTGCCGGT 18397 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 18398 CAGGGTCTTGACGAAGATCTGCAT 18421 >seq2269 Length=80277 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || || || || || || ||||| || | || |||| || |||||| Sbjct 52626 ACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGACAGCGTTCGGCCGTCTTCG 52567 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || |||||||| ||||| ||||| || |||||||| Sbjct 52566 AGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCTTGG 52507 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||| ||||| || ||||| || ||||| | |||||| Sbjct 52506 ATCTTGGTCTTGACGTTGTCAATCGTGTCGGATGACTCCACCTCGAGGGTGATCGTCTTG 52447 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||| || || || | ||||| Sbjct 52446 CCTGTGAGAGTCTTCACAAAGATCTGCAT 52418 >seq580 Length=47424 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | |||||| | || || ||| Sbjct 27743 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 27684 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || || || || ||||| || Sbjct 27683 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGG 27624 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || ||||| ||| ||||| || ||||| | |||||| Sbjct 27623 ATCTTGGTCTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTC 27564 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 27563 CCCGTGAGGGTCTTGACGAAAATCTGCAT 27535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109440546407096