Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2399 405 1e-107 seq2181 185 2e-41 >seq2399 Length=11591 Score = 405 bits (448), Expect = 1e-107 Identities = 1156/1754 (66%), Gaps = 71/1754 (4%) Strand=Plus/Minus Query 212687 CAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTC 212746 |||||| | |||||| || |||| ||||| | | ||| ||| ||||||||||| Sbjct 4908 CAGATGGATGTTCAGACTTTGGGACTGGCAGATGAAAGCGCCCCGGTCCGCGGCCATGTC 4849 Query 212747 TATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCC--TCT 212804 ||||| | |||| |||| |||||| || |||||| | | | |||| ||| || Sbjct 4848 AATGATGACCTTCTGCGAGATCTCCCAGACCGTCTTGTACAGCGCCTTGA--TCCGGTCC 4791 Query 212805 GGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTG---TATGGTCAGCTGCAGGCGCATG 212861 |||| ||||| | ||||| | || || | || |||| || | | | ||| Sbjct 4790 GGGATCCCGGGCACATTCTGAATCGAGCCGCCATGCGCTATGATCCGGTTCTT---CATC 4734 Query 212862 TCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTG-ACCAGGTGAGGGTTGACTATCTG 212920 | ||||||||| || ||| || || | || | | | ||| |||||||| | || Sbjct 4733 TGCTCGTTCCACAG-CCCTTGCTCGACGAGCTCGCGGAGCAGCCACGGGTTGACGACTTG 4675 Query 212921 GAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTC 212980 ||| || || | ||||| | | ||| | ||| ||||| ||||| | || ||| Sbjct 4674 GAACTCGCCAGCCAGCACACGGCGGGTGTACAGGTTGCTCGTGTAAGGCTCAAAGCACTC 4615 Query 212981 GTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTT 213040 |||| ||||| ||||| || ||| || ||||| || || | || || ||| Sbjct 4614 GTTGAAGCCCAGGATCTGACTCGTCGAGGCCGTCGGCATAGGTGCGAGCAACAGCGAGTT 4555 Query 213041 CCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAG 213100 || | |||||| | | ||| |||| | ||| ||||||||||| |||| | Sbjct 4554 CCGGAGACCGTGCGAGGCAATGTTGCGCTTGATCTCAGCCCAGTCCCAA-----AGACCG 4500 Query 213101 GTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCC 213160 | || ||| ||||||||| |||| | ||| ||||| | |||| ||| Sbjct 4499 CTGGGGGTA----ACGCACCACATGTCGTACTGGAGCTCGCCCTTGCTGGCCGGGCAGCC 4444 Query 213161 CTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGC 213220 || ||| | ||||| || |||||||||| |||||||| || || || || || Sbjct 4443 CTCGTATGTCTCGTAGGTCCCGAGCTCCTTGGCAAGCTCGCACGATCGCTCAAGAGCGGC 4384 Query 213221 GTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGAC-GTGAAGG 213279 || ||||||||| || || |||| ||||||||||||||||||| ||||| || || | Sbjct 4383 GTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTTCTTGGCCTC--GGGACTGTCAAAG 4326 Query 213280 GCAT----CATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGT 213335 || | ||| || | | ||| | || || || || | ||| |||||||||||||| Sbjct 4325 GCGTAGCCCATGAT-CAT--GAATGCGTCTGCGAGACCGTTGACTCCGATGCCGATGGGG 4269 Query 213336 CTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATC 213395 | ||| | || ||| ||||| | ||| || ||||| |||| |||||||||| Sbjct 4268 CGGTGGCGCATGTTCGACTTCTTGGCCTCGGGCACAGGGTAGTAGTTCACGTCGATGATC 4209 Query 213396 TTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCG---TGAT-TGAA 213451 ||||||||||||| | | || |||||||| | | || | || | | || || Sbjct 4208 TTGTTGAGGTTGCCACAGACGACCTTGGTGACCTCGTGAAGCTTCTTGAAGTCATATGTC 4149 Query 213452 CACGTA-------GCCCC-CGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTG 213503 | ||| || ||| || | | ||||| || || ||||| |||||| Sbjct 4148 CTCGTGTTGGTTTGCGAGTCGTAATGGATGTAGGTCGGCAGAGCCATACTGGCAAGGTTG 4089 Query 213504 CAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCAT 213563 || || || ||||| | | | ||||||| |||||||| ||||| ||||| | Sbjct 4088 CAGACAGCGACCTCGTCCGGAGCGCTGTACTCTATGATCTCCGTGCAAAGGTTAGAGTTC 4029 Query 213564 CGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATG 213623 ||||||||| ||||||| ||||| ||||| |||||||| |||||||| |||||| Sbjct 4028 TTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCAGCGTCCTTGTAAAGCATG 3969 Query 213624 TAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTG 213683 | ||| || ||||| ||||| | |||| | | |||||| | | |||||| Sbjct 3968 AAAGGGTTGCCAGTCTCCGTCTGGGCCTCCAGAACGGCGTACCAGAGCTTCTGAGCCTTG 3909 Query 213684 ACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTC 213742 ||| || | || || | | || |||||||| |||||||| | | |||||| Sbjct 3908 ACCGTGCGGCGAGCA----CGACCCTCGCGCTCGTACTTCTCGTAGAGGGCCTCGAATTC 3853 Query 213743 GTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCC 213802 | || |||| | | || || || || ||||| |||||||| ||| || || Sbjct 3852 CTCACCATAGACGTCGGCAAGACCGGGGCACTCAGCGGGGCACATGAGCGACCACTCTCC 3793 Query 213803 GTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCT 213862 || | | ||||| || |||||||| ||| || | ||| || ||| ||| || || | Sbjct 3792 GTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCAAAGGGCGTAGAAGAGCTCACG 3733 Query 213863 GGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGC 213922 || | ||| ||| || ||| || | || || || || || |||| ||||| Sbjct 3732 GGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAACTCGAAGACGTCCGA 3673 Query 213923 GTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCAC 213979 |||||| ||||| |||||||||||||| || |||| || | ||||| |||||||| || Sbjct 3672 GTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCGCTTGTTGCCACCCTGGTCGAC 3613 Query 213980 CAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTT 214039 | || ||||||||| || || | ||| || | |||||||| ||||| Sbjct 3612 GTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAACAATGCCGTTGGAGACGCCGTT 3553 Query 214040 GGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGC---TCATGGAGAGCCCTATGCC 214096 |||||| || || || ||||||| | |||| || ||| ||| |||||| ||||| Sbjct 3552 GGTTCCAGCAATGTAAGAGCCGGTG--CCTC-GGATGCAGTGAATGTTGAGCCCGATGCC 3496 Query 214097 ACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCT 214156 |||||| |||| |||||||||||| | | | || || ||||||| | ||| Sbjct 3495 ACCGGCCGTCTTGCTGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATGCCGTCGATGGA 3436 Query 214157 GTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTT 214216 |||||| | | | | || ||||||| || | |||||| ||| | || | || Sbjct 3435 GTCATCCTTCATCGTGACCAGGAAGCAGGATGACATCTGGGGATTGGGTGTTCCGGCATT 3376 Query 214217 GAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCA- 214275 ||| || ||||| ||| ||| | | |||| | || | ||| |||| || || | Sbjct 3375 GAAGAGGGTGGGCGAGGCGTGGGTGAAGTACTTCTCCGACATGAGGTTGTAAGTGTCGAT 3316 Query 214276 GGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGG 214335 || ||| | ||||| || ||| || | ||| | ||| ||||| || || | Sbjct 3315 GGCCTG-GTCAATGTCCCGCCCGTGAATGCCGACGGCGACTCGCATGAGCATATGTTGCG 3257 Query 214336 GCCTCTCTATGGGTCCTTTGGGGCCCTTG------AGCAGGTAGGAGCGCTCCAGAGTCT 214389 ||||||| | | |||| ||| ||| ||||| || |||||||| ||||||| Sbjct 3256 GCCTCTC--GGCGACCTT----GCCGTTGATGCGCAGCAGATAAGAGCGCTCGAGAGTCT 3203 Query 214390 TGAACCCAAAGTAG 214403 |||| || |||||| Sbjct 3202 TGAAGCCGAAGTAG 3189 >seq2181 Length=22295 Score = 185 bits (204), Expect = 2e-41 Identities = 542/827 (66%), Gaps = 21/827 (3%) Strand=Plus/Plus Query 47860 CTCA-AAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGG 47918 |||| || ||||| ||||| || | || |||||||||||||||||| |||||| || | Sbjct 13160 CTCACAAAAAGTTAGTCTTTCCTTGCAGAGAGATGTTCTCCATGAAGTCGAAGGGATTTG 13219 Query 47919 GTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCG 47977 | || || | | || ||| | ||||||| | || ||||| ||||| Sbjct 13220 TCGCATTGTAGTGCT-TCTCGTTGCCGAGGGCGACCAGCAGTCGGTCGGCGACAAACTCG 13278 Query 47978 ATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTG 48037 ||||||| ||| || | ||||||||| || | || |||| || | ||| Sbjct 13279 ATGTATTGGCTCATCAGACGGGCGTTCATGCCGATCAATGAACATGGCAGCGCATCAGTG 13338 Query 48038 AGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAG 48097 || || | | ||| || || ||||| || | || || ||| || || || Sbjct 13339 AGGAAGGCTTGCTCGATGGTGACAGCTTCGCCAATGATGCGCAAGACG----AC-CTCAG 13393 Query 48098 GGTTTGTTGCGCAGGTGCTTGGCAT------AGAGCATGCAGGCAAAGTCCCTGTGCAAG 48151 ||| || |||| | |||| || |||| | ||| |||||||| |||||| Sbjct 13394 GGTGTGG-GCGC---TTCTTGAGATGACTGAAGAGTAGGCACGCAAAGTCGGTGTGCAGA 13449 Query 48152 CCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGT 48211 || ||||| |||||||||||| |||||||||| ||| || ||||||| || | || Sbjct 13450 CCCTCGTCTCGGCTGATGAGCTCGTTGGAGAACGTGAGGCCGGGCATGAGACCGCGCTTC 13509 Query 48212 TTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAAC 48271 ||||||||||| || | || || || ||||||||||||||||||||||| || ||||| Sbjct 13510 TTGAGCCAGAAGATGGAGGCAAAGGACCCAGAGAAGAAGATGCCCTCCACGGCGGCGAAG 13569 Query 48272 GCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCT 48331 ||| | | | ||| | || | | | |||| |||||| | ||||| || Sbjct 13570 GCGATCAATCGCTCAGCAAAGGTCGATTCGGTGTCGTTGATCCACCGCATGGCCCACTCG 13629 Query 48332 GCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCT 48391 ||||| | ||||| | || || ||||| ||||| ||||| | | || | Sbjct 13630 GCCTTTTGCTTGACGACAGGGATGGTCTCCATGGCATCAAAGAGGTAGTCGCGTTGCTGA 13689 Query 48392 GCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATA 48451 | ||| || || || || ||| | ||| |||| ||||| | ||||| || Sbjct 13690 GGGTCGCGAATGTATGTGTCGATGAGCAGAGAGTATGTCTCCGAGTGAATGTTCTCCATC 13749 Query 48452 GCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTC 48511 ||||||||| ||||||||| | ||||| | ||||| || | || | | Sbjct 13750 ATGATCTGGAAGCCGTAGAAGCATCGAGCCTCTGCTGCTTGCACCTCCGAACTAAACCGC 13809 Query 48512 TCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTA 48571 || | || ||||| ||||| || || ||||| || || |||||||| ||||| || | Sbjct 13810 TCGACGAGGTTCTCGTTGACAATACCGTCTGATGCTGCGAAGAAGGCGAGGACGTGGCTG 13869 Query 48572 AGGAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGG 48628 | || || ||||| |||| | | | || |||| | || | ||| ||| ||| Sbjct 13870 ATAAAGTGACGCTCATTGTCGTTCAACTTGTTGTCCCAGTCGTGCATGTCCTTGGAAAGG 13929 Query 48629 TCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 || | || || |||||||||| || || ||| || |||||||| Sbjct 13930 TCGATCTCCTCAGCAGTCCAGAACGATGCCTCTGCCTTCTTGTACAT 13976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931499171665920