Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2399 327 2e-84 seq2181 205 2e-47 >seq2399 Length=11591 Score = 327 bits (362), Expect = 2e-84 Identities = 862/1296 (67%), Gaps = 55/1296 (4%) Strand=Plus/Minus Query 221358 CCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCG 221417 |||| | || ||||| | |||||||| ||| | | ||| | |||| || || Sbjct 4453 CCGGGCAGCCCTCGTATGTCTCGTAGGTCCCGAGCTCCTTGGCAAGCTCGCACGATCGCT 4394 Query 221418 TCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAG 221477 || || ||||||||||||||||| |||||| ||||||| |||||||||||||| Sbjct 4393 CAAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTTCTTGGCCTCGGGAC 4334 Query 221478 AAGTGAAGGGCATA-CGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 || || ||| || | || ||| |||| | |||| || || || | |||||||| || Sbjct 4333 T-GTCAAAGGCGTAGCCCATGATCATGAATG-CGTCTGCGAGACCGTTGACTCCGATGCC 4276 Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 |||||| | ||| | | |||| || || || ||||| || || |||| ||||| Sbjct 4275 GATGGGGCGGTGGCGCATGTTCGACTTCTTGGCCTCGGGCACAGGGTAGTAGTTCACGTC 4216 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | ||||||||||| | || ||| || |||||| ||||||| | Sbjct 4215 GATGATCTTGTTGAGGTTGCCACAGACGACCTTGGTGACCTCGTGAAGCTTCT------T 4162 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACA---AAAGCGTTTAGG-------- 221704 ||| | | | | ||||| || | | | || | | |||| Sbjct 4161 GAAGTCATAT-----GTCCTCGTGTTGGTTTGCGAGTCGTAATGGATGTAGGTCGGCAGA 4107 Query 221705 GCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCT 221764 || | ||||| ||||| || || || ||||||||| | | |||| ||||||||| Sbjct 4106 GCCATACTGGCAAGGTTGCAGACAGCGACCTCGTCCGGAGCGCTGTACTCTATGATCTCC 4047 Query 221765 GTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCA 221824 || || ||||| | ||||||||| || |||| || || || |||||||| |||||| Sbjct 4046 GTGCAAAGGTTAGAGTTCTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCA 3987 Query 221825 GCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCC 221884 ||||||||||| ||||| || || |||||||||| ||| ||| |||||| || | Sbjct 3986 GCGTCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCCGTCTGGGCCTCCAGAACGGCGTAC 3927 Query 221885 CAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGT 221943 ||||| | |||| || | ||||| | | ||||||| || | | | || Sbjct 3926 CAGAGCT-TCTGAGCCTTGACCGTGCGGCGAGCACGACCCTCGCGCTCGTACTTCTCG-- 3870 Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACA 222003 ||||| || || | ||||| || | ||| | || || || ||| ||||| || Sbjct 3869 -TAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCGGGGCACTCAGCGGGGCA 3811 Query 222004 CATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAG 222063 ||| || ||| | ||| | || ||| | || |||||| | ||| || ||||| || Sbjct 3810 CATGAGCGACCACTCTCCGTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCAAAG 3751 Query 222064 CGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAA 222123 || | ||||| || | || || ||||||| ||||| ||| ||||| || || | Sbjct 3750 GGCGTAGAAGAGCTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAG 3691 Query 222124 AAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTT 222183 ||||| || | ||| | |||||| ||||| | |||| ||| | ||| || |||||||| Sbjct 3690 GAACTCGAAGACGTCCGAGTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCGCTT 3631 Query 222184 GTTGCCACCCTGATCCACCATCCTCTCCAGAG----CGTTGAAGATGCGAAGGGTCGGTA 222239 |||||||||||| || | | | | || | |||||||| ||||| | || | Sbjct 3630 GTTGCCACCCTGGTCGA----CGTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAA 3575 Query 222240 CCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC 222299 | | |||||||| |||||||| || |||||| | ||| | |||| || | | Sbjct 3574 CAATGCCGTTGGAGACGCCGTTGGTTCCAGCAATGTAAGAGCCG--GTGCCTC-GGATGC 3518 Query 222300 TGGCAGACATG---CCGATACCACCGG-CGTGTTTCGAGATCATGGCGCAGCTCTTGAGA 222355 | | || ||||| ||||||| ||| || | |||||||||||| ||||||| Sbjct 3517 AGTGAATGTTGAGCCCGATGCCACCGGCCGTCTTGC-TGATCATGGCGCAAGTCTTGAGG 3459 Query 222356 GTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATC 222415 ||||| |||||| || || ||||| ||||| | | | ||| || || || |||||| Sbjct 3458 GTGTCGTAGATGCCGTCGATGGAGTCATCCTTCATCGTGACCAGGAAGCAGGATGACATC 3399 Query 222416 TGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTA 222475 || | |||| | | ||| || || || ||||| |||||| || ||||| | Sbjct 3398 TGGGGATTGGGTGTTCCGGCATTGAAGAGGGTGGGCGAGGCGTGGGTGAAGTACTTCTCC 3339 Query 222476 GACATCAGATCGTACGTCTCTACGACTCTGG-CGATGTTGTCCCCGTGAATCTGCATGGC 222534 ||||| || | ||| || || | | | |||| | |||| ||||||||| | ||| Sbjct 3338 GACATGAGGTTGTAAGTGTCGATGGC-CTGGTCAATGTCCCGCCCGTGAATGCCGACGGC 3280 Query 222535 GCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTGGAG---AGCAG 222591 | || |||| ||| | || |||||||| | || ||||| | || | ||||| Sbjct 3279 GACTCGCATGAGCATATGTTGCGGCCTCTCGGC--GA-CCTTGCCGTTGATGCGCAGCAG 3223 Query 222592 GTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTT 222627 || || || ||||||||||| || |||||||| Sbjct 3222 ATAAGAGCGCTCGAGAGTCTTGAAGCCGAAGTAGTT 3187 >seq2181 Length=22295 Score = 205 bits (226), Expect = 2e-47 Identities = 542/829 (65%), Gaps = 16/829 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||| || || ||||| || || Sbjct 13985 ATCTGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACTGCTGAGGAGATCGACCTT 13926 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGAC---GAGCAGCATTTTCTCAAG 25593 ||||||||||| ||| |||| || | || ||| |||| || ||| ||| Sbjct 13925 TCCAAGGACATGCACGACTGGGACAACAAGTTGAACGACAATGAGCGTCACTTTATCAGC 13866 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| ||||| || || ||||| || |||||||| || |||| | Sbjct 13865 CACGTCCTCGCCTTCTTCGCAGCATCAGACGGTATTGTCAACGAGAACCTCGTCGAGCGG 13806 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 || | ||| ||||| | ||||| || |||||||| |||||||| || Sbjct 13805 TTTAGTTCGGAGGTGCAAGCAGCAGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATG 13746 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| || | ||| | || |||||| ||| | | Sbjct 13745 GAGAACATTCACTCGGAGACATACTCTCTGCTCATCGACACATACATTCGCGACC-CTCA 13687 Query 25774 GAGA-GAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 | | | || || |||| |||||| ||| ||| || | ||||| ||||| Sbjct 13686 GCAACGCGACTACCTCTTTGATGCCATGGAGACCATCCCTGTCGTCAAGCAAAAGGCCGA 13627 Query 25833 GTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||||||| |||||||||| | | || | || |||| ||||| || | |||| Sbjct 13626 GTGGGCCATGCGGTGGATCAACGACACCGAAT-CGACCTTTGCTGAGCGATTGATCGCCT 13568 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 | || || |||||||||||||| ||| || || ||||| ||||||||||||||||| Sbjct 13567 TCGCCGCCGTGGAGGGCATCTTCTTCTCTGGGTCCTTTGCCTCCATCTTCTGGCTCAAGA 13508 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || ||||||||| || || |||||||||||||||||| | |||||||||| Sbjct 13507 AGCGCGGTCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCAGCCGAGACGAGGGTC 13448 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA-- 26069 | |||| || ||||| ||||| |||| || | || ||| | || | | || Sbjct 13447 TGCACACCGACTTTGCGTGCCTACTCTTCA---GTCA---TCTCAAGAAGCGCCCACACC 13394 Query 26070 -AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 ||| ||||| | ||||| || ||||| |||||| | | || | Sbjct 13393 CTGAGGTCGTCTTGCGCATCATTGGCGAAGCTGTCACCATCGAGCAAGCCTTCCTCACTG 13334 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 | ||||||||| | | || |||||||||||||| |||| Sbjct 13333 ATGCGCTGCCATGTTCATTGATCGGCATGAACGCCCGTCTGATGAGCCAATACATCGAGT 13274 Query 26189 ATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACC 26248 ||| ||||||| |||||| | || || || | | ||||| | || | || | Sbjct 13273 TTGTCGCCGACCGACTGCTGGTCGCCCTCGGCAACGAGAAGCACTACAATGCGACAAATC 13214 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTT 26297 | |||||||| ||||| ||||| || || |||| ||||| ||||| || Sbjct 13213 CCTTCGACTTCATGGAGAACATCTCTCTGCAAGGAAAGACTAACTTTTT 13165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928811268702720