Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2399 190 2e-43 seq2181 87.8 2e-12 >seq2399 Length=11591 Score = 190 bits (210), Expect = 2e-43 Identities = 551/833 (66%), Gaps = 15/833 (2%) Strand=Plus/Plus Query 75221 ATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACA 75280 ||| ||||||| ||||| ||||||| |||||| |||||||| | | | || || Sbjct 3265 ATGCTCATGCGAGTCGCCGTCGGCATTCACGGGCGGGACATTGACCAGGCCATCGACACT 3324 Query 75281 TACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGG 75339 ||| || ||||| | | ||| |||| ||||| | || |||||||||||||| || Sbjct 3325 TACAACCTCATGTCGGAGAAGTAC-TTCACCCACGCCTCGCCCACCCTCTTCAATGCCGG 3383 Query 75340 TACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAA 75399 ||||| | || |||||||| |||||||| || | | ||||| ||||| ||| | Sbjct 3384 AACACCCAATCCCCAGATGTCATCCTGCTTCCTGGTCACGATGAAGGATGACTCCATCGA 3443 Query 75400 CGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA--AAGTGGGCTGGGGGTATT 75457 ||| ||||| | || || | | | | ||||| | ||| ||| ||| || || || Sbjct 3444 CGGCATCTACGACACCCTCAAG-ACT-TGCGCCATGATCAGCAAGACGGCCGGTGGCATC 3501 Query 75458 GGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAA 75517 ||| | |||| || | ||| || ||| ||| || || || || Sbjct 3502 GGGCTCAACATTCACTGCATCCGAGGCACCGGCTCTTACATTGCTGGAACCAACGGCGTC 3561 Query 75518 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAA 75577 || | || ||| |||| |||||||| || || ||| ||| || ||||| || | || Sbjct 3562 TCCAACGGCATTGTTCCCATGCTTCGAGTCTTCAACAACACCGCTCGCTACGTCGACCAG 3621 Query 75578 GCGGGGCGTC--GCAA--GGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATAT 75633 | | ||| | || | |||| | | || ||||| | || || ||||| | || | Sbjct 3622 G-GTGGCAACAAGCGACCGGGGGCTTTTGCCATCTACATTGAGCCTTGGCACTCGGACGT 3680 Query 75634 CATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCT 75693 | | |||||||| || | | ||||| || | || |||| ||| | || || Sbjct 3681 CTTCGAGTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGAGCT 3740 Query 75694 CTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATG 75753 ||| | |||| |||||||| ||| | ||||||||||| || || || || | || Sbjct 3741 CTTCTACGCCCTTTGGATTCCCGACTTGTTCATGAAGCGAGTCGAACAGAACGGAGAGTG 3800 Query 75754 GTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGA 75813 ||| || | || || | || || ||||| |||||| |||||||| || || Sbjct 3801 GTCGCTCATGTGCCCCGCTGAGTGCCCCGGTCTTGCCGACGTCTATGGTGAGGAATTCGA 3860 Query 75814 AGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC-CAATGCGACTGTACCAGCCGCCG 75872 ||||||||| ||||| || |||||| | || | || || || | || | | | Sbjct 3861 GGCCCTCTACGAGAAGTACGAGCGCGAGGGTCGTGCTCGCCGC-ACGGT-CAAGGCTCAG 3918 Query 75873 ATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTAC 75931 | | | ||| | || |||| | | |||||||||||||| | || | ||||||||| Sbjct 3919 AAGCTCTGGTACGCCGTTCTGGAGGCCCAGACGGAGACTGGCAACCCTTTCATGCTTTAC 3978 Query 75932 AAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAAT 75991 ||||| ||| ||| ||| ||||| ||||| | || || ||||||| ||| || Sbjct 3979 AAGGACGCTGCCAACCGCAAGTCGAACCAGAAGAACCTCGGCACCATCAAGAACTCTAAC 4038 Query 75992 CTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAA 76044 ||||||||||| || ||||||||| | | ||| ||| ||||| ||||| Sbjct 4039 CTTTGCACGGAGATCATAGAGTACAGCGCTCCGGACGAGGTCGCTGTCTGCAA 4091 >seq2181 Length=22295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 65101 GTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGT 65160 |||||||| ||||||||||| ||||| || | | || | ||| | |||||||| ||| Sbjct 13559 GTGGAGGGCATCTTCTTCTCTGGGTCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGT 13500 Query 65161 CTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAG 65220 |||||||| ||||| ||||| || || || || |||||| |||||||| ||| Sbjct 13499 CTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCAGCCGAGACGAGGGTCTGCACACC 13440 Query 65221 GAGTTTGC 65228 || ||||| Sbjct 13439 GACTTTGC 13432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596548063837440