Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq1607 152 1e-32 >seq1607 Length=1474 Score = 152 bits (168), Expect = 1e-32 Identities = 263/378 (70%), Gaps = 32/378 (8%) Strand=Plus/Plus Query 39878 TGCTCTGCCCC-TGAGAACTGGGCCGCCTGAAGCTGGAGTTTTCCGC-TAAG-TTTCCCT 39934 ||||||||| | ||| |||| || || |||| | ||||| || |||| ||||| | Sbjct 305 TGCTCTGCCACGTGAAAACTAGGTCGTTGCGAGCTAGCGTTTTTGGCCTAAGATTTCCTT 364 Query 39935 GGCTGGGAGAGGA-GCGGAATCGCATGAAGGCATCGAAGTTCACAGAGGCGCAGAAGGCG 39993 |||| || |||| ||| | ||| ||||||||| |||| | || ||||||| | || Sbjct 365 GGCTTGGCAAGGAAGCGTA---GCACAAAGGCATCGCAGTTGAAGGACGCGCAGAGGCCG 421 Query 39994 TTCATCCTGAAGCAGGGCGAGGAAGGCACGCCGGTCGCAAAGATCTGCCGCAAGGCCGGG 40053 ||| || | ||||||||||||||||| || ||||||| || ||||||| ||||| ||| Sbjct 422 TTCGTCGTCAAGCAGGGCGAGGAAGGAACAACGGTCGCGGAGGTCTGCCGGAAGGCTGGG 481 Query 40054 ATCAGCTAGGCGGCCTACTTCAACTGGAAGAAGCGA----TATGGC---GGCTAA----- 40101 | | || || | ||||||||||||| |||||| | || ||| || || Sbjct 482 AGCGGCCGGGAGACCTACTTCAACTGCAAGAAGAAATACTTAGGGCTGTTGCCAACGGAG 541 Query 40102 -------AGC------AGCTTGAGGACGAGAATGCCCGACTGAAGAAGATCGTGGCCGAC 40148 ||| ||| ||||| | ||| | || ||||| ||||||||| || Sbjct 542 ATGCATCAGCTGCGCGCGCTGGAGGAGGTGAACGGGCGCTTGAAGCAGATCGTGGTGGAA 601 Query 40149 CTGACGCTCGACCGCGAGATGTTGAAGGACGTCATCCGCCGAAAACTCTGAGGCCTTTCC 40208 |||||||||||||| || || |||||||| | | | |||||| |||| | || | Sbjct 602 CTGACGCTCGACCGGGAAATTTTGAAGGATATTGTTCCCCGAAAGCTCTATGACCGGATC 661 Query 40209 GGAAGCGACAGCTCGTCG 40226 ||||||| |||| |||| Sbjct 662 GGAAGCGCGAGCTGGTCG 679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128613189059408