Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2399 109 2e-18 seq735 107 6e-18 seq1079 87.8 5e-12 >seq2399 Length=11591 Score = 109 bits (120), Expect = 2e-18 Identities = 342/522 (66%), Gaps = 7/522 (1%) Strand=Plus/Minus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||||||| |||| ||||| ||| |||||||| ||||||||||||| | ||||||| Sbjct 4066 CGCTGTACTCTATGATCTCCGTGCAAAGGTTAGAGTTCTTGATGGTGCCGAGGTTCTTCT 4007 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 |||| || || | ||| ||| |||||||| || ||| | ||| | || |||||| ||| Sbjct 4006 GGTTCGACTTGCGGTTGGCAGCGTCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCCGTCT 3947 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATT-AATTTGCTTGTTGTATCTGCCT 155804 | || ||||||| |||||| | | || || | ||| | | | || Sbjct 3946 GGGCCTCCAGAACGGCGTACCAGAGCTTCTGAGCCTTGACCGTGCGGCGAGCA-CGACCC 3888 Query 155805 TCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCA 155864 || ||| || ||| || || | | | |||||||| || || || || Sbjct 3887 TCGCGCTCGTACTTCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCG 3828 Query 155865 GGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGAT-TACACGCTCCATAAA 155923 ||||||| | ||||||| | ||||||| | | | | | | | || |||| ||| || Sbjct 3827 GGGCACTCAGCGGGGCACATGAGCGACC-ACTCTCCGTTCTGTTCGACTCGCTTCATGAA 3769 Query 155924 TACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTG 155983 | || ||||| || ||||| || || | || |||||| | |||||| Sbjct 3768 CAAGTCGGGAATCCAAAGGGCGTAGAAGAGCTCACGGGCGCGAACCTCCTCCTTGCCGTG 3709 Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043 ||||||| || || | ||| || | || | || ||||| | || || || Sbjct 3708 GTTCTTCCTGAGGTCGAGGAACTCGAAGACGTCCGAGTGCCAAGGCTCAATGTAGATGGC 3649 Query 156044 AAAA-CTACCATT--CCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 |||| | || | | | ||||||||||| || || || ||||| || || |||||||| Sbjct 3648 AAAAGCCCCCGGTCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAGAC 3589 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 | ||||| |||| ||| || ||||| ||| |||||||| Sbjct 3588 TCGAAGCATGGGAACAATGCCGTTGGAGACGCCGTTGGTTCC 3547 >seq735 Length=45632 Score = 107 bits (118), Expect = 6e-18 Identities = 174/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTT 251471 |||||| | | ||| ||||| | | ||| |||||| ||||| | | ||| |||| Sbjct 675 ACCACAGATGTCACAAACATGAAGCCGGTACGCATCACTAGCGTCGAACATCCGCTCCTT 734 Query 251472 GGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAG 251531 |||| || | ||||| || |||||||||||||||||||| || || || ||||| Sbjct 735 CAAGAAGGAAGCTATGCCGTGCGAGATCATACAATCACGCTCCATCTCTCCAAACCGAAG 794 Query 251532 ACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGAT 251591 |||||| || ||| || |||||| | |||||||| || | | | || || || | Sbjct 795 ACCACCGTCACGACTCCGGCCCTCGACCGGCTGACGCGTCAAAATCTGCA-CGGGCCCAC 853 Query 251592 GGAGCGGCTA-TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGAC 251650 | | || | || ||| || | ||||| ||||| |||||||||||| | | |||| Sbjct 854 GCGCCCGCGAGTGGATCTTGTCGTCGACCATGTGCTTCAGACGCTGGTAGTACGTCGGAC 913 Query 251651 CGATGAAG 251658 ||| |||| Sbjct 914 CGAGGAAG 921 >seq1079 Length=40219 Score = 87.8 bits (96), Expect = 5e-12 Identities = 209/305 (69%), Gaps = 22/305 (7%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 |||||| || || ||||| || || || || || || || ||||| || ||||| || Sbjct 30152 CTTGATCAAGCGGCGCTGGATGTAGCCCGTCTCAGCCGTCTTGACAGCCGTGTCAATCAG 30093 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATA 302700 ||| | ||||| |||| || |||||||| | || | || ||| || || | | Sbjct 30092 ACCTTCCCGACCGGCCATGGCGTGGAAGAAGAATTCCTGCGCGGTC--AGACCGCGCAGG 30035 Query 302701 AAGGAGCTCTCAACGAAACCACGCGCCTCGGGC--GAATCGTCGAACTTGGTAAAGTGTG 302758 | ||| |||| || || ||||| ||||| ||| |||| |||||| ||||| | Sbjct 30034 TACGAGTTCTCCACAAAGCCACGGCTTTCGGGACTGAA--GTCGTCCTTGGTGAAGTGCG 29977 Query 302759 GCAGGGTCCTGTTCTCATAGCCGTATGGG-ATACGCTTTCCATCAACGTTCTGCTGTCC- 302816 ||||||| | || || | || | ||| | ||||| || || || |||||||||| Sbjct 29976 GCAGGGTGCGGTA-TCGGAACCCAAAGGGCACGCGCTTCCCCTCGACAATCTGCTGTCCG 29918 Query 302817 ---CAGGCACGAAATCATCTGCGAAATATTTA--AATCACTGCCCTTGGAGCCAGCATTT 302871 ||||| ||| |||||| ||||| || | || || |||||||||||||| | Sbjct 29917 ACACAGGC-CGA---CATCTGGGAAATGTTGATGAAGGAC--CCCTTGGAGCCAGCGATG 29864 Query 302872 ACCAT 302876 ||||| Sbjct 29863 ACCAT 29859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471763139069256