Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2114 109 4e-19 >seq2114 Length=91084 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || ||||| || || || || ||||| || |||| || || || Sbjct 18434 ACGGAGGACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCC 18493 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || ||||| || | || | | || || ||||| ||||| |||||||| Sbjct 18494 GTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCCGGGGGAATGCCCTCTTT 18553 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || || || || |||||| | || | ||||| ||| ||| ||||| || || | Sbjct 18554 GTCCTG-GATCTTGGTCTTGACATTGTCAATGGTGTCTGAAGATTCGACTTCGAGCGTGA 18612 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || |||||||| | ||| || || || |||||||| Sbjct 18613 TCGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 18649 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| || || || || || || || ||||| || || | | |||||| Sbjct 23138 CGAAGGACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCG 23079 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || || | || | | ||| || ||||||||||| ||||| ||| Sbjct 23078 TCCTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTG 23019 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || || ||||| |||||| | || | ||||| ||| || || || || || || Sbjct 23018 TCCTG-GATCTTTGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGAT 22960 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | || || || || |||||||| Sbjct 22959 GGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 22924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385205641247208