Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2456 96.9 2e-15 seq2114 93.3 3e-14 >seq2456 Length=10261 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||| || |||||||| || || |||||||| ||| || || ||| |||| || Sbjct 1112 ACCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCG 1171 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||||||||||| || | |||||||| || | || | || || ||||| Sbjct 1172 AGCTGTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGG 1231 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | || | ||| | ||||||| || ||||| || | |||||||| || Sbjct 1232 ATCTT-GGTCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTT 1290 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || ||||||||||| Sbjct 1291 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 1320 >seq2114 Length=91084 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | ||||| || || || ||| || || |||||||| ||||| Sbjct 23151 ACCACCGCGCAGGCGAAGGACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGA 23092 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| || | || |||||||| || || | ||| || || || |||| Sbjct 23091 GAGCGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGG 23032 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| || || ||| | |||| |||| |||||| || || | Sbjct 23031 AATGCCCTCCTTGTCCTGGATCTT-TGTCTTGACATTGTCAATGGTGTCTGAAGACTCGA 22973 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | ||| || || |||||||||||| Sbjct 22972 CCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATA 22923 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || || ||| ||||| |||||||| || || Sbjct 23378 CCACCGCGGAGACGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGAA 23319 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || || |||||||| ||||| ||||| || || | || Sbjct 23318 AGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGGGGA 23259 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| | |||| ||| | |||||| ||||| || Sbjct 23258 ATGCCCTCCTTGTCCTGGATCTT-TGTCTTGACATTGTCGATGGTGTCTGAAGATTCAAC 23200 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | ||| || || |||||||||||| Sbjct 23199 CTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATA 23151 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| || || |||||||| || || Sbjct 18422 ACCACCACGGAGACGGAGGACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGA 18481 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | || || ||||| || || | |||||| || || | || Sbjct 18482 AAGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCCGGGGG 18541 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || |||||||| || || || | |||| |||| |||||| ||||| | Sbjct 18542 AATGCCCTCTTTGTCCTGGATCTTG-GTCTTGACATTGTCAATGGTGTCTGAAGATTCGA 18600 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||||||| || || || | || || || |||||||||||| Sbjct 18601 CTTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 18650 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || || ||| ||| || || |||||||| || ||| Sbjct 18195 CCACCGCGGAGACGGAGCACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAG 18254 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | ||| || || || || || | ||||| || || | || Sbjct 18255 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCCGGGGGA 18314 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | || | ||| | ||||| |||||| || Sbjct 18315 ATGCCCTCCTTGTCTTGGATCTTC-GTCTTTACGTTGTCGATTGTGTCCGATGATTCAAC 18373 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || || |||||||||||| Sbjct 18374 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATA 18422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328692430440960