Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2399 98.7 9e-16 seq2269 84.2 2e-11 >seq2399 Length=11591 Score = 98.7 bits (108), Expect = 9e-16 Identities = 914/1462 (63%), Gaps = 55/1462 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| ||||| |||||||| ||||||||||| | | |||| ||||| ||| ||||| Sbjct 4685 TTGACGACTTGGAACTCGCCAGCCAGCACACGGCGGGTGTACAGGTTGCTCGTGTAAGGC 4626 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 ||||| |||| || ||| | || || ||| | || || ||||| || | | Sbjct 4625 TCAAAGCACTCGTTGAAGCCCAGGATCTGACTCGTCGAGGCCGTCGGCATAGGTGCGAGC 4566 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 |||| || || || ||||||| || |||||| ||| | ||||||||| Sbjct 4565 AACAGCGAGTTCCGGAGACCGTGCGAGGCAATGTTGCGCTTGATCTCAGCCCAGTCCCAA 4506 Query 147073 ATCGAC--GAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGAC 147130 | ||| ||| || ||| ||||||||||||||||||| | || ||||| || | Sbjct 4505 A--GACCGCTGGGGGTAACGCACCACATGTCGTACTGGAGCTCGCCCTTGCTGGCCGGGC 4448 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCG 147190 ||| || | || |||| | ||| || || | || || | ||| || | Sbjct 4447 AGCCCTCGTATGTCTCGTAGGTCCCGAGCTCCTTGGCAAGCTCGCACGATCGCTCAAGAG 4388 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250 | | | ||| ||||| ||| ||| || |||| || | || || || || Sbjct 4387 CGGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTTCTTGGCCTCGGGACTGTC-A 4329 Query 147251 AAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309 ||||| || | || | || || || || || | ||| | || |||| |||||| || Sbjct 4328 AAGGCGTAGCCCATGATCATGAATGCGTCTGCGAGACCGTTGACTCCGATGCCGATGGGG 4269 Query 147310 CGATG----CTTTTCG-TTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAA 147364 || || | |||| | || || ||| || | || |||| ||| || | Sbjct 4268 CGGTGGCGCATGTTCGACTTCTTGGCCTCGGGC-----ACAGGGTAGTAGTTCACGTCGA 4214 Query 147365 TAATCTTGTTGAGGTTACGCAC-TACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCA 147423 | |||||||||||||| | ||| || || || || | | || |||| ||| ||| Sbjct 4213 TGATCTTGTTGAGGTTGC-CACAGACGACCTTGGTGACCTCGTGAAGCTTCTTGAAGTCA 4155 Query 147424 TAAGTCC-CGTCTT------CGACACGT-ACGCA--TTGGT--TCACGGCGATAGACGCC 147471 || |||| ||| || ||| ||| | | | | ||| || || ||| || Sbjct 4154 TATGTCCTCGTGTTGGTTTGCGAGTCGTAATGGATGTAGGTCGGCAGAGCCATACTGGCA 4095 Query 147472 AGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTG 147531 || |||||||| || ||| || | ||||||||| | ||| || | ||| ||||| Sbjct 4094 AGGTTGCAGACAGCGACCTCGTCCGGAGCGCTGTACTCTATGATCTCCGTGCAAAGGTTA 4035 Query 147532 CTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAG 147591 | || ||| || | || | ||| || || || ||| ||||| ||| | Sbjct 4034 GAGTTCTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCAGCGTCCTTGTAA 3975 Query 147592 AGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC---AACGATAAACCTATGCAGGTCC 147648 |||||| | || ||| ||||| || | || |||| ||| || | | Sbjct 3974 AGCATGAAAGGGTTGCCAGTCTCCGTCTGGGCCTCCAGAACGGCGTACC---AGAGCTTC 3918 Query 147649 TGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCA 147708 || || ||| | ||| || |||||| |||||| |||||| | ||| Sbjct 3917 TGAGCCTTGACCGTGCGGCGAGCACGACCCTCGCGCTCGTACTTCTCGTAGAGGGCCTCG 3858 Query 147709 AACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCAC 147768 || || || || ||| |||||||| ||||| |||| | || ||||| ||||||||| Sbjct 3857 AATTCCTCACCATAGACGTCGGCAAGACCGGGGCACTCAGCGGGGCACATGAGCGACCAC 3798 Query 147769 ATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGA 147828 ||| | | || || ||| |||| || || | ||| || ||||| | || Sbjct 3797 TCTCCGTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCAAAGGGCGTAGAAGAGC 3738 Query 147829 TCGCGCGCTTTGCAA---TCCTCGGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATA 147884 || || || || | ||||| ||| ||| | | | | | || | | | Sbjct 3737 TCACGGGC---GCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAACTCGA-A 3682 Query 147885 GATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCC 147941 || ||| | |||||| || |||||||||| ||| | || || ||| || || || Sbjct 3681 GACGTCCGAGTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCGCTTGTTGCCACC 3622 Query 147942 CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGC 148001 ||||||||| | ||| | ||||||| || || || | |||||| | | |||| | | Sbjct 3621 CTGGTCGACGTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAACAATGCCGTTGGA 3562 Query 148002 AGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCC 148061 ||||||||| | || | |||| | |||| | ||| | ||| | || Sbjct 3561 GACGCCGTTGGTTCCAGCAATGTAAGAGCCGGTGCCTCGGATGCAGTGAATGTTGAGCCC 3502 Query 148062 AATGCCGCC-GCCGTACTT--TGAT-ATGGCAGCGCAATCGCCCAATGTCGTGTAGATGC 148117 ||||| || ||||| ||| |||| ||| |||||| | || |||||||| Sbjct 3501 GATGCCACCGGCCGT-CTTGCTGATCATG---GCGCAAGTCTTGAGGGTGTCGTAGATGC 3446 Query 148118 CGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCG 148177 |||||||| ||| | || | | || || || || |||| || ||| | | | Sbjct 3445 CGTCGATGGAGTCATCCTTCATCGTGACCAGGAAGCAGGATGACATCTGGGGATTGGGTG 3386 Query 148178 TTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGAT 148237 |||| || ||| |||||||| ||||| || || | || | ||| | | | Sbjct 3385 TTCCGGCATTGAAGAGGGTGGGCGAGGCGTGGGTGAAGTACTTCTCCGACATGAGGTTGT 3326 Query 148238 ACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCA 148297 | || || || || | || ||||| ||||||||||| | ||||| |||||||||| Sbjct 3325 AAGTGTCGATGGCCTGGTCAATGTCCCGCCCGTGAATGCCGACGGCGACTCGCATGAGCA 3266 Query 148298 TGTGCTGTGGTCGTTCGGCAAC 148319 | || || || | ||||| || Sbjct 3265 TATGTTGCGGCCTCTCGGCGAC 3244 >seq2269 Length=80277 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || ||||||||||| || || || ||||||||||| || |||| | Sbjct 52611 GATTCCTTCTGGATGTTGTAGTCCGACAGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCA 52552 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||||||||| || ||||| ||||| || || || || || || | Sbjct 52551 AAGATGAGACGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTGGTCTTGACG 52492 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | |||||| |||| || | ||| || || || ||||| || Sbjct 52491 TTGTCAATCGTGTCGGATGACTCCACCTCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTC 52432 Query 132110 ATGAAAATCTGCATGA 132125 | || |||||||||| Sbjct 52431 ACAAAGATCTGCATGA 52416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476593994335680