Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2181 233 3e-55 seq2399 172 8e-37 seq1 118 2e-20 seq935 105 1e-16 seq1079 102 1e-15 >seq2181 Length=22295 Score = 233 bits (258), Expect = 3e-55 Identities = 385/542 (71%), Gaps = 15/542 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| || || ||||| || |||||| |||||| Sbjct 13986 GATCTGGCAAATGTAC-AAGAAGGCAGAGGCATCGTTCTGGACTGCTGAGGAGATCGACC 13928 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | | |||||| | ||| |||| | ||||| || || |||| Sbjct 13927 TTTCCAAGGACATGCACGACTGGGACAACAAGTTGAACGACAATGAGCGTCACTTTATCA 13868 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||||||| || ||| || || || || || ||||||||| | || Sbjct 13867 GCCACGTCCTCGCCTTCTT-CGCAGCATCAGACGGTATTGTCAACGAGAACCTCGTCGAG 13809 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || |||| ||||| ||| ||||||| || | || ||||| ||||||||| Sbjct 13808 CGGTTTAGTTCGGAGGTGCAAGCAGCAGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 13749 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||| ||||| || || ||||| || || |||||||| ||| | ||||| Sbjct 13748 ATGGAGAACATTCACTCGGAGACATACTCTCTGCTCATCGACACATACATTCGCGACCC- 13690 Query 1456072 GTCGAGAAGG--ACCACCTCTTTCGCGCCATCGACACGGTGCC-GTCGGTGAGGAAAAAG 1456128 || || | || |||||||| ||||| || || | || |||| | | | ||||| Sbjct 13689 -TCAGCAACGCGACTACCTCTTTGATGCCATGGAGACCATCCCTGTCG-TCAAGCAAAAG 13632 Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188 ||||| ||||| ||| |||||||||| | | | ||||| |||||| ||||| | Sbjct 13631 GCCGAGTGGGCCATGCGGTGGATCAACGAC-ACCGAATCGAC-CTTTGCTGAGCGATTGA 13574 Query 1456189 TCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247 ||| ||| ||||| || ||||||||||| ||||| || || | ||||||| |||| Sbjct 13573 TCGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCTGGGTCCTTTGCCTCCATCTTCTGGC 13514 Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGAC 1456307 ||||||||||||| ||||||||||| | || || |||||| | ||||| || ||| Sbjct 13513 TCAAGAAGCGCGGTCTCATGCCCGG-CCTCACGTTCTCCAACGAGCTCATCAGCCGAGAC 13455 Query 1456308 GA 1456309 || Sbjct 13454 GA 13453 Score = 93.3 bits (102), Expect = 6e-13 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||| | ||| || ||| |||||| ||| || ||| || ||||||| | Sbjct 13376 ATCATTGGCGAAGCTGTCACCATCGAGCAAGCCTTCCTCACTGATGCGCTGCCATGTTCA 13317 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 | ||||||||||||||| | || ||| |||| ||||| || ||| ||||||||||| | Sbjct 13316 TTGATCGGCATGAACGCC-CGTCTGATGAGCCAATACATCGAGTTT-GTCGCCGACCGAC 13259 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || |||||| | |||||||||||| || | || || ||| | ||| Sbjct 13258 TGCTGGTCGCCCTCGGCAAC-GAGAAGCACTACAATGCGACAAATCCCTTCGACTTCATG 13200 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTT 1456737 ||| ||||| || | || ||||| |||||||| Sbjct 13199 GAGAACATCTCTCTGCAAGGAAAGACTAACTTTTT 13165 >seq2399 Length=11591 Score = 172 bits (190), Expect = 8e-37 Identities = 274/393 (70%), Gaps = 15/393 (4%) Strand=Plus/Plus Query 259790 GTCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCC 259849 |||| |||| |||| || ||||||||||||| |||||| | ||| | | ||| | Sbjct 3244 GTCGCCGAGAGGCCGCAACATATGCTCATGCGAGTCGCCGTCGGCATTCACGGGCGGG-- 3301 Query 259850 GACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTG 259909 || | ||| | || || ||| ||| ||| | ||||||| || ||| Sbjct 3302 -ACATTGACCAGGC-------CA-----TCGACACTTACAACCTCATGTCGGAGAAGTAC 3348 Query 259910 TTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCG 259969 |||||| || ||||||| ||||| |||||||| || || || |||| || || Sbjct 3349 TTCACCCACGCCTCGCCCACCCTCTTCAATGCCGGAACACCCAATCCCCAGATGTCATCC 3408 Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| ||| | ||||||| || || ||||| |||||||| ||||| |||||| Sbjct 3409 TGCTTCCTGGTCACGATGAAGGATGACTCCATCGACGGCATCTACGACACCCTCAAGACT 3468 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCC 260089 ||||| | ||| |||| ||||||| |||||||| | | ||| | || | | Sbjct 3469 TGCGCCATGATCAGCAAGACGGCCGGTGGCATCGGGCTCAACATTCACTGCATCCGAGGC 3528 Query 260090 GCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGC 260149 | ||| | ||| | || || ||||||||| ||||||||| |||| ||||||||||| Sbjct 3529 ACCGGCTCTTACATTGCTGGAACCAACGGCGTCTCCAACGGCATTGTTCCCATGCTTCGA 3588 Query 260150 GTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || ||| |||| || ||||||||||||||| Sbjct 3589 GTCTTCAACAACACCGCTCGCTACGTCGACCAG 3621 >seq1 Length=203074 Score = 118 bits (130), Expect = 2e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || |||||||||||||||||| || | | ||| || |||||| || Sbjct 190378 ATCTACCGTGTCCTCAAGCAGGTGCACCCCGACACTGGT-----ATC-TCAAACAAGGCC 190325 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||| | ||||| |||||| | ||||| |||| ||||||| | |||||||| Sbjct 190324 ATGGCCATCCTCAACTCCTTTGTCCAGGACATCTTCGAGCGCATCGCCTCCGAGGCCTCC 190265 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || ||||||| || ||| | ||||||||||| || ||||| Sbjct 190264 AAGCTTGCATCCTACAACAAGAAGTCGACCATCTCTGCCCGCGAGATCCAAACGGCCGTC 190205 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || |||||| | | ||| ||||| ||| ||||||| ||||||| || |||| Sbjct 190204 CGGCTGATCCTCCCCGGTGAACTTTCCAAGCACGCCATCTCCGAAGGTACCA 190153 >seq935 Length=42169 Score = 105 bits (116), Expect = 1e-16 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 332966 TCCATGGTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGG 333025 ||||||||| ||||| ||||| ||||| | | || | || |||||| ||||||||| Sbjct 34662 TCCATGGTCCGTCGGAGCGCCTGCTGGGCTCCTGAGGTCATGCTGTCGGCTTCGTCGAGG 34721 Query 333026 ATGATGATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATG 333085 ||||||| |||||| || ||| |||| || || |||| ||| | ||||| Sbjct 34722 ATGATGAGCTTGTGCCGGCCGGGCGGTAGGGTGACTGTTTTTTGGGCAAAGCTCTTGATC 34781 Query 333086 ATCTTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGC 333141 | || || |||||||| | || |||||||| |||||||| || ||||| ||||| Sbjct 34782 TTATTCCGGACGACGTCGATTCCTCGCTCGTCGGACGCGTTCAGCTCGAGGACGGC 34837 >seq1079 Length=40219 Score = 102 bits (112), Expect = 1e-15 Identities = 167/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 1816048 GCCGTCGCCGCCATATGCAAACTGGACAATGTCGCCGTTGGCGTTGCGCACGAGGCCGCC 1816107 |||||| |||| || | ||||||| ||||| | | | ||| ||||| |||| | Sbjct 30239 GCCGTCCTCGCCGTACGAGAACTGGATAATGTGGTTCATCGAGTTACGCACCGTGCCGTC 30180 Query 1816108 GCGCTTGATCTGCAGGCTCTCCATCGACTTGATGCACCGGCGCTGGATGTAGCCACGTC- 1816166 | || | || ||| | || |||||| | ||||||||||||||||| |||| Sbjct 30179 GTAGCAGACCATCACATCCTCGAGCGCCTTGATCAAGCGGCGCTGGATGTAGCC-CGTCT 30121 Query 1816167 CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACA 1816226 | || |||||||| |||||||| | ||| || || || ||| | || ||| || || | Sbjct 30120 CAGCCGTCTTGACAGCCGTGTCAATCAGACCTTCCCGACCGGCCATGGCGTGGAAGAAGA 30061 Query 1816227 TCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCGCACAAAGCCGCGGCTCTCGGG 1816284 || ||| | | || |||||| ||||||||| ||||||||| ||||| ||||| Sbjct 30060 ATTCCTGCGCGGTCAGACCGCGCAGGTACGAGTTCTCCACAAAGCCACGGCTTTCGGG 30003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177532647091856