Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2269 125 7e-24 seq2114 122 9e-23 seq580 118 1e-21 seq2456 105 7e-18 seq2399 93.3 4e-14 >seq2269 Length=80277 Score = 125 bits (138), Expect = 7e-24 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| |||||||| || || |||||||| || |||||||||| || || | || | Sbjct 52635 AGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGACAGC-GTTCG 52577 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| |||||||| ||||| ||||| || | |||||| || || || || ||||| || Sbjct 52576 GCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGGATGCCCTC 52517 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| || || ||||| ||| | |||||||| || ||||| ||||| || Sbjct 52516 CTTGTCTTGGATCTTGGTCTTGACGTTGTCAATCGTGTCGGATGACTCCACCTCGAGGGT 52457 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 || || || || || | ||| || || || || ||||| ||||| Sbjct 52456 GATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCATGATGTTT 52411 >seq2114 Length=91084 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| || | ||| || || || |||||||| ||||||||||| | Sbjct 23378 CCACCGCGGAGACGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGAA 23319 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || ||||| ||||| ||||| ||||| ||||| || || || || Sbjct 23318 AGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGGGGA 23259 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || ||| ||||| ||| | ||||| || ||||| || Sbjct 23258 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCGATGGTGTCTGAAGATTCAACC 23199 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || ||||| || ||||| Sbjct 23198 TCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 23152 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || ||||| ||||| |||||||||||||| Sbjct 18195 CCACCGCGGAGACGGAGCACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAG 18254 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || |||||||| || || | ||||| || || || || Sbjct 18255 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCCGGGGGA 18314 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || || || ||| | |||||| || ||||| || Sbjct 18315 ATGCCCTCCTTGTCTTGGATCTTCGTCTTTACGTTGTCGATTGTGTCCGATGATTCAACC 18374 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || ||||| || ||||| Sbjct 18375 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 18421 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || ||||| |||||||| |||||||||||| Sbjct 18651 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAG 18710 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || ||||| ||||| ||||| |||| ||| || || || || || Sbjct 18711 AGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGA 18770 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||| || || || || Sbjct 18771 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGAGGACTCGACC 18830 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| |||||||| || || || | ||| |||||| Sbjct 18831 TCGAGGGTAATGGTCTTGCCAGTAAGAGTCTTAACG 18866 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| ||||| || ||||| || ||||||||||| | Sbjct 18423 CCACCACGGAGACGGAGGACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAA 18482 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| |||||||| ||||| || || || | |||||| || || || || Sbjct 18483 AGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCCGGGGGA 18542 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || || ||||| ||| | ||||| || ||||| || Sbjct 18543 ATGCCCTCTTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCTGAAGATTCGACT 18602 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || | || || ||||| || ||||| Sbjct 18603 TCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 18649 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || ||||| || |||||||||||| | ||| || ||| || ||||| Sbjct 23127 GTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTG 23068 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || || | ||| || || || ||||| ||||| || || || || || || Sbjct 23067 CTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 23008 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | ||||| ||| | ||||| || || || || ||||| || ||||| || ||||| Sbjct 23007 TGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 22948 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| || ||||| Sbjct 22947 CAGCGTCTTGACGAAGATCTGCAT 22924 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || |||||||| |||||||||||| || |||| | || || ||||| Sbjct 22899 GTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTG 22840 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || || | |||||| || || || || || || || || || || || || Sbjct 22839 CTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTT 22780 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | || || || || || || ||||| || ||||| || ||||| Sbjct 22779 GGTCTTGACGTTGTCGATGGTATCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 22720 Query 134690 TAAAGTTTTAACG 134702 | ||| |||||| Sbjct 22719 AAGAGTCTTAACG 22707 >seq580 Length=47424 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| || || || ||||| || ||||||||||| || ||| | Sbjct 27752 AGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 27693 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || || | ||||||||| || || || || || || Sbjct 27692 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATTCCCTCC 27633 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||| || ||||| ||||| || Sbjct 27632 TTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTG 27573 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || |||||||| ||||| Sbjct 27572 ATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 27535 >seq2456 Length=10261 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || ||| ||||| || ||||||||||||| | || | ||| ||| Sbjct 1112 ACCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCG 1171 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 |||||||| || ||||| || | |||||||| || || || || || || || || || Sbjct 1172 AGCTGTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGG 1231 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | |||||||| || ||||| ||||| || || || || Sbjct 1232 ATCTTGGTCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTG 1291 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| | || || ||||| || ||||| ||| Sbjct 1292 CCGGTGAGGGTCTTGACGAAGATCTGCATCTTG 1324 >seq2399 Length=11591 Score = 93.3 bits (102), Expect = 4e-14 Identities = 276/423 (65%), Gaps = 2/423 (0%) Strand=Plus/Plus Query 8542 TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCC 8601 ||||||||||||||| | ||| | ||| | || || | ||||| || ||||| || Sbjct 4252 TCGAACATGCGCCACCGCCCCATCGGCATCGGAGTCAACGGTCTCGCAGACGCATTCATG 4311 Query 8602 ATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAA 8661 || || || | ||| || || | || || | ||||||||| | || || Sbjct 4312 ATCATGGGCTACGCCTTTGACAGTCCCGAGGCCAAGAAGCTCAACATTCAGATCTTCGAG 4371 Query 8662 ACGGTGTATTACGGCGCATTAGAAGCCAGC-TGTCAACTTGCCCGAGAATTGGGCACGTA 8720 || | || ||| ||| | || || | | || | |||||| || | || || || Sbjct 4372 ACCATCTACCACGCCGCTCTTGA-GCGATCGTGCGAGCTTGCCAAGGAGCTCGGGACCTA 4430 Query 8721 CGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGT 8780 ||| | |||| |||| |||| |||||| || | || |||||||||||| || Sbjct 4431 CGAGACATACGAGGGCTGCCCGGCCAGCAAGGGCGAGCTCCAGTACGACATGTGGTGCGT 4490 Query 8781 CACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTT 8840 || |||| | | | ||| | ||| || | || ||||| ||||| |||| | Sbjct 4491 TACCCCCAGCGGTCTTTGGGACTGGGCTGAGATCAAGCGCAACATTGCCTCGCACGGTCT 4550 Query 8841 GCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAA 8900 || || ||||||||| | || ||||| || ||| |||| ||| || |||| Sbjct 4551 CCGGAACTCGCTGTTGCTCGCACCTATGCCGACGGCCTCGACGAGTCAGATCCTGGGCTT 4610 Query 8901 CAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGA 8960 |||||| | ||||||||| | ||| | |||| ||||| | || ||| |||| ||||| Sbjct 4611 CAACGAGTGCTTTGAGCCTTACACGAGCAACCTGTACACCCGCCGTGTGCTGGCTGGCGA 4670 Query 8961 TTT 8963 || Sbjct 4671 GTT 4673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505380155117760