Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2114 122 7e-23 seq2269 107 2e-18 seq2456 96.9 3e-15 seq580 82.4 6e-11 >seq2114 Length=91084 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | |||||| || || || || |||||||| | | || |||||||| Sbjct 18441 ACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCTTCG 18500 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| | |||||||||||||| ||||| || | |||||||| || | Sbjct 18501 AGCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCCGGGGGAATGCCCTCTTTGTCCTGG 18560 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | | || | ||||||| | ||| ||||| || || || | ||| Sbjct 18561 ATCTTGGTCTTGACATTGTCAATGGTGTCTGAAGATTCGACTTCGAGCGTGATCGTCTTG 18620 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || || || ||||| |||||| Sbjct 18621 CCAGTCAGGGTCTTGACGAAGATCTGCATA 18650 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || ||||| || ||||||||| Sbjct 22922 CCACCACGCAGGCGAAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAA 22863 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || |||||| | |||||||||||||| ||||| || Sbjct 22862 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGG 22803 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||||| | || | | | || | || |||| || || || Sbjct 22802 ATACCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTATCTGAGGACTCGACC 22743 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCAC 27235 || || || || | ||||| || ||||| || || Sbjct 22742 TCGAGGGTGATGGTCTTGCCGGTAAGAGTCTTAAC 22708 >seq2269 Length=80277 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| |||| || | || | || || || || || || |||||||| | Sbjct 52644 CCGCCGCGCAGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAC 52585 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||||||||| || ||||| | |||||||||||||| ||||| || Sbjct 52584 AGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGG 52525 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| | || | | | || | ||||| | | || || Sbjct 52524 ATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATCGTGTCGGATGACTCCACC 52465 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || ||||| ||||||||||| ||||| Sbjct 52464 TCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCAT 52418 >seq2456 Length=10261 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || || ||||||||||||| | || |||| ||||||||||| ||||| | Sbjct 1130 TCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCGAGCTGTTTTCCGGCAAAG 1189 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 ||||| ||||| || ||||| || | ||||| || || ||||||| | || | | | Sbjct 1190 ATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTG 1249 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| | || || || || || || || | ||||| || || || || || Sbjct 1250 TCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACG 1309 Query 27237 AAGATTTGCAT 27247 ||||| ||||| Sbjct 1310 AAGATCTGCAT 1320 >seq580 Length=47424 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/202 (69%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | |||| |||| |||||||| || ||| Sbjct 27731 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 27672 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| | || Sbjct 27671 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTG 27612 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | || ||||| || || Sbjct 27611 ACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTC 27552 Query 27231 TTCACAAAGATTTGCATAGCTG 27252 || || || || ||||| |||| Sbjct 27551 TTGACGAAAATCTGCAT-GCTG 27531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424919443371456