Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2399 183 4e-41 seq2181 82.4 1e-10 >seq2399 Length=11591 Score = 183 bits (202), Expect = 4e-41 Identities = 545/831 (66%), Gaps = 11/831 (1%) Strand=Plus/Minus Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 ||||| ||||| ||| ||| | | ||||||||| || || || || | ||| || Sbjct 4091 TTGCAGACAGCGACCTCGTCCGGAGCGCTGTACTCTATGATCTCCGTGCAAAGGTTAGAG 4032 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 |||| || || || | ||||| ||||| ||| |||| || |||||||| ||| Sbjct 4031 TTCTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCAGCGTCCTTGTAAAGC 3972 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGC 111429 ||| | || | || ||||||||||| | | |||| || | ||| | | || | | | Sbjct 3971 ATGAAAGGGTTGCCAGTCTCCGTCTGGGCCTCCAGAACGGCGTACCAGAGCTTCTGAGCC 3912 Query 111430 TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 111489 | | || || | || || ||||| ||||||||| ||||||||| || || || Sbjct 3911 TTG-ACCGTGCGGCGAGCACGACCCTCGCGCTCGTACTTCTCGTAGAGGGCCTCGAATTC 3853 Query 111490 CTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACC 111549 |||||| |||||| ||||| || || | || || | || ||||| | || Sbjct 3852 CTCACCATAGACGTCGGCAAGACCGGGGCACTCAGCGGGGCACATGAGCGACCACTCTCC 3793 Query 111550 ACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 111609 | || || ||||||||||| | ||| |||||||| |||| | ||||| || | Sbjct 3792 GTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCAAAGGGCGTAGAAGAGCTCACG 3733 Query 111610 ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGC 111669 ||| |||| || | || ||||| | | || |||||||| | || |||| Sbjct 3732 GGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAACTCGAAGACGTCCGA 3673 Query 111670 GTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTAC 111726 |||||| ||||||| |||| || | || ||| ||| ||| | || | || Sbjct 3672 GTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCGCTTGTTGCCACCCTGGTCGAC 3613 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 ||||| || ||| ||| || || |||||||| |||| ||| || | || || || Sbjct 3612 GTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAACAATGCCGTTGGAGACGCCGTT 3553 Query 111787 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 || || ||| ||| || ||| | || |||| | ||| || || || Sbjct 3552 GGTTCCAGCAATGTAAGAGCCGGTGCCTCGGATGCAGTGAATGTTGAGCCCGATGCCACC 3493 Query 111847 AGCCCACTT--TGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 ||| ||| ||| | ||||| | | | | || || | ||||| |||| ||| ||| Sbjct 3492 GGCCGTCTTGCTGATCATGGCGCA-AGT-CTTGAGGGTGTCGTAGATGCCGTCGATGGAG 3435 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 || ||||| | | || |||||||| |||||||| || | ||||| || |||||| Sbjct 3434 TCATCCTTCATCGTGACCAGGAAGCAGGATGACATCTGGGGATTGGGTGTTCCGGCATTG 3375 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAA 112023 |||||||| || | ||||| |||| ||| | | ||||| || ||| || || | Sbjct 3374 AAGAGGGTGGGCGAGGCGTGGGTGAA-GTACTTCTCCGACATGAGGTTGTAAGTGTCGAT 3316 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACAT 112074 | | |||||||| |||||| ||||||| ||||| ||||||| ||| Sbjct 3315 GGCCTGGTCAATGTCCCGCCCGTGAATGCCGACGGCGACTCGCATGAGCAT 3265 >seq2181 Length=22295 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| |||||| || || || || ||||| || || Sbjct 13432 GCAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTGGAGAACGTGAGGCCG 13491 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||||||| |||||||| | ||| | || | | || ||||| ||||||||||| Sbjct 13492 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGACCCAGAGAAGAAGATG 13551 Query 122779 CCCTCCAC 122786 |||||||| Sbjct 13552 CCCTCCAC 13559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628009328044800