Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2399 230 3e-55 seq2181 131 2e-25 seq2257 87.8 2e-12 >seq2399 Length=11591 Score = 230 bits (254), Expect = 3e-55 Identities = 1122/1758 (64%), Gaps = 59/1758 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 |||||||||||| |||||||||| | ||||| ||||||| |||| | ||||| || Sbjct 4991 CGGAGGTAGTACGTCCCCGTCTTCAACCCCTTCTTCCAGCCATAGAAGTGCATGCTGGT- 4933 Query 117897 AACTTGGAGAGGGTTGGACT-TTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 117955 || |||| | | | | | || || || ||||| ||||||||| || |||||| Sbjct 4932 AAGTTGGCCAAAGCTCGGCGCTTGCAGATGGATGTTCAGACTTTGGGACTGGCAGATGAA 4873 Query 117956 -GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCC 118014 ||| ||||| ||||| ||||| ||||| | ||||| | ||| ||||| || ||| Sbjct 4872 AGCG-CCCCGGTCCGCGGCCATGTCAATGATGACCTTCTGCGAGATCTCCCAGACCGTCT 4814 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACC---CG 118071 |||| || ||| || || ||||| | | ||| || || || || || || Sbjct 4813 TGTACAGCGCCTTGATCCGGTCCGGGATCCCGGGCACATTCTGAATCGAGCCGCCATGCG 4754 Query 118072 CCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCA 118131 | ||| | | | |||||| | || ||| || || || ||| || | Sbjct 4753 CTATGATCCGG---TTCTTCATCTGCTCGTTCCACAGCCCTTGCTCGACGAGCTCGCGGA 4697 Query 118132 CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 118191 || | ||||| || ||||| || || || || | || | ||| Sbjct 4696 GCAGCCACGGGTTGACGACTTGGAACTCGCCAGCCAGCACACGGCGGGTGTACAGGTTGC 4637 Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251 ||||||| |||||||||||||| ||| |||| ||| || || ||||| || |||| Sbjct 4636 TCGTGTAAGGCTCAAAGCACTCGTTGAAGCCCAGGATCTGACTCGTCGAGGCCGTCGGCA 4577 Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGT 118311 | ||||| | | || ||| |||||||| | |||| ||||| | Sbjct 4576 TAGGTGCGAGCAACAGCGAGTTCCGGAGACCGTGCGAGGCAATGTTGCGCTTGATCTCAG 4517 Query 118312 CCCAGTCGTAGTTGA--GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTG 118369 ||||||| | || ||| | | | | |||||| || ||||||| || | Sbjct 4516 CCCAGTCCCAAA-GACCGCTGGGGGTAACGCA-CCACATGTCGTACTGGAGCTCGCCCTT 4459 Query 118370 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC---GCCAATTCGGA 118426 | || || | ||||| ||||||| || || || | | |||| || | ||| | Sbjct 4458 GCTGGCCGGGCAGCCCTCGTATGTCTCGTA--GGTCC-CGAGCTCCTTGGCAAGCTCGCA 4402 Query 118427 -GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGG 118485 | |||| || || || ||||| || || || || || || || || | ||||| Sbjct 4401 CGATCGC-TCAAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTTCTTGG 4343 Query 118486 CCTCGTCGGAAT--CAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGG 118541 ||||| ||| | |||| ||| || | || | || ||| | || |||||||| | | Sbjct 4342 CCTCG--GGACTGTCAAAGGCGTAGCC--CATGATCATGAATGCGTCTGCGAGACCGTTG 4287 Query 118542 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGA 118598 || |||| ||| || ||||| || | ||| || |||||| || ||| ||| || Sbjct 4286 ACTCCGATGCCGATGGGGCGGTGGCGCATGTTCGACTTCTTGGC---CTCGGGCACAGGG 4230 Query 118599 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 118658 || | ||| ||||| | | | || || || ||| ||||| |||| || ||| Sbjct 4229 TAGTAGTTCACGTCGATGATCTTGTTGAGGTTGCCACAGACGACCTTGGTGACCTCGTGA 4170 Query 118659 AGCTTTTCGTAATCAAAACT--------------GCGAGTCTCTTCATTGACATACTTAG 118704 ||||| | | | ||| | | ||||||| | || || || | | Sbjct 4169 AGCTTCTTGAAGTCATATGTCCTCGTGTTGGTTTGCGAGTCG--TAATGGATGTAGGTCG 4112 Query 118705 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 118764 | || || || || || || || |||| | ||| ||| | | |||||||||| | Sbjct 4111 GCAGAGCCATACTGGCAAGGTTGCAGACAGCGACCTCGTCCGGAGCGCTGTACTCTATGA 4052 Query 118765 TTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 118824 | |||||||| | ||| || |||| |||||||| | |||||| || || ||||| || Sbjct 4051 TCTCCGTGCAAAGGTTAGAGTTCTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCGGT 3992 Query 118825 TACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 118884 | || ||||||||||||||| | || | || |||||||| |||| || |||| | Sbjct 3991 TGGCAGCGTCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCCGTCTGGGCCTCCAGAACGG 3932 Query 118885 CCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTT 118943 | | ||||| | || | ||| || ||| | || || ||||| ||||||||| Sbjct 3931 CGTACCAGAGCTTCTG-AGCCTTGACCGTGCGGCGAGCACGACCCTCGCGCTCGTACTTC 3873 Query 118944 GTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG 119003 ||||||||| || || || ||||| | | || | || || || || | | ||| Sbjct 3872 TCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCGGGGCACTCAGCGGGG 3813 Query 119004 CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 119063 || | ||| ||||| | || || || || ||||||||||| | ||| || ||||| Sbjct 3812 CACATGAGCGACCACTCTCCGTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCAA 3753 Query 119064 AGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 119123 || || ||||||| || || |||| | || || | || || || | | || Sbjct 3752 AGGGCGTAGAAGAGCTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCG 3693 Query 119124 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG- 119182 | || || | || |||| |||||| || || | ||| | || | | |||| || Sbjct 3692 AGGAACTCGAAGACGTCCGAGTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCGC 3633 Query 119183 --ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATG 119240 ||| |||||| || || | || ||| ||| || || |||||||| |||| Sbjct 3632 TTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAACA 3573 Query 119241 ATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGG 119300 || || | ||| ||| || || || ||| ||| || ||| || ||| Sbjct 3572 ATGCCGTTGGAGACGCCGTTGGTTCCAGCAATGTAAGAGCCGGTGCCTCGGATGCAGTGA 3513 Query 119301 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 119360 |||| | || || || || ||| ||| ||| ||||| | |||| || || Sbjct 3512 ATGTTGAGCCCGATGCCACCGGCCGTCTTGCTGATCATGGCGCAAGTCTTGAGGGTGTCG 3453 Query 119361 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGC 119420 ||||| || ||||| |||||| |||| | | || ||||||||| ||||| || || Sbjct 3452 TAGATGCCGTCGATGGAGTCATCCTTCATCGTGACCAGGAAGCAGGATGACATCTGGGGA 3393 Query 119421 CTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACAT 119479 ||||||| || || |||||||| || || | |||||| |||| ||| | | ||||| Sbjct 3392 TTGGGTGTTCCGGCATTGAAGAGGGTGGGCGAGGCGTGGGTGAA-GTACTTCTCCGACAT 3334 Query 119480 CTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCG 119539 || ||| || || | | | | |||||| ||||||||| |||| | ||| || Sbjct 3333 GAGGTTGTAAGTGTCGATGGCCTGGTCAATGTCCCGCCCGTGAATGCCGACGGCGACTCG 3274 Query 119540 CATAAACATGTATTGGGG 119557 ||| | ||| | ||| || Sbjct 3273 CATGAGCATATGTTGCGG 3256 >seq2181 Length=22295 Score = 131 bits (144), Expect = 2e-25 Identities = 189/259 (73%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 130002 TGAAGAGTTC-CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTC 130060 |||||||| |||| |||| || ||| ||||||||||| ||| |||||| || || Sbjct 13418 TGAAGAGTAGGCACG-CAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTG 13476 Query 130061 GAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAG 130120 ||||| || || ||||||||||| |||||||| | |||||| || | ||| || Sbjct 13477 GAGAACGTGAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGAC 13536 Query 130121 CCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGG 130180 |||||||||||||| |||||||| ||||| || | | ||||||||||||| || Sbjct 13537 CCAGAGAAGAAGATGCCCTCCACGGCGGCGAAGGCGATCAATCGCTCAGCAAAGG-TCGA 13595 Query 130181 GACTTTGT-ATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGA-TACACGGGACGG 130238 | ||| | | |||| ||| ||||||| ||||||| || || ||| |||| || Sbjct 13596 TTCGGTGTCGTTGATCCACCGCATGGCCCACTCGGCCTTTTGCTTGACGACA-GGGATGG 13654 Query 130239 TCTGGATCGCTTCAAAGAG 130257 ||| || || |||||||| Sbjct 13655 TCTCCATGGCATCAAAGAG 13673 >seq2257 Length=17672 Score = 87.8 bits (96), Expect = 2e-12 Identities = 214/315 (68%), Gaps = 16/315 (5%) Strand=Plus/Minus Query 179808 ATCCGTCATAATCATAAGCCGACCATAGCGAAG-CTCGGAAACATCTTGATAATCCTTAC 179866 ||||||||| ||||| | | ||||| || || || | | ||| ||| | || Sbjct 10851 ATCCGTCATGATCATCAAGCTTCCATATCGCAGACTTTCGACCGAGTTG-TAAACTTTTG 10793 Query 179867 CTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTT-----TGATGTGAG 179921 | ||||| || ||||| |||| ||||| | |||| ||| ||| ||||| | | Sbjct 10792 CGTGTTGGAGGCCCAAAATCTCCTTGATGTGCTTGATCTCGGCGTTCTTCATGATG-GCG 10734 Query 179922 TTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTA 179981 | | | |||||| || ||||| || || ||||| | |||||||| || | Sbjct 10733 TCGTG----TGAAGCTTCGCGGACGTTAAGCAGTTTTCCACGTAAGGGGAACACTCCCCA 10678 Query 179982 GTGATCACGACCAACCACAGAGAGACCAGCAACTGC-GAGGGTCTTCGCGGAATCACCCT 180040 || || || || || || || |||||| | || || || | | || || || || |||| Sbjct 10677 GTTGTCGCGTCCGACGACGGAAAGACCACCGACAGCAGATGCT-TTGGCTGAGTCTCCCT 10619 Query 180041 CCGTCACGATGAGCGTACACTTTCCAGATTGTGC-CGTCCCTGCCTTGTTCGCGTCGTCC 180099 |||||| ||| ||||| || | || | || | | |||||| || ||||||||||| || Sbjct 10618 CCGTCAGGATCAGCGTGCAGTCACC-GCTTTTCCTCGTCCCCGCATTGTTCGCGTCTTCA 10560 Query 180100 AACTTGGGAATACCA 180114 | ||||||||| ||| Sbjct 10559 AGCTTGGGAATGCCA 10545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618412874489280