Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2399 181 1e-40 seq2181 123 3e-23 >seq2399 Length=11591 Score = 181 bits (200), Expect = 1e-40 Identities = 524/794 (66%), Gaps = 13/794 (2%) Strand=Plus/Plus Query 104231 ATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACA 104290 ||| ||||||| || ||| |||| ||||| ||| |||||||| | | | || || Sbjct 3265 ATGCTCATGCGAGTCGCCGTCGGCATTCACGGGCGGGACATTGACCAGGCCATCGACACT 3324 Query 104291 TACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGG 104349 ||| || ||||| | | ||| |||| ||||| | || |||||||||||||| || Sbjct 3325 TACAACCTCATGTCGGAGAAGTAC-TTCACCCACGCCTCGCCCACCCTCTTCAATGCCGG 3383 Query 104350 TACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAA 104409 ||||| | ||||| ||||| |||||||| || | | ||||| ||||| ||| | Sbjct 3384 AACACCCAATCCCCAGATGTCATCCTGCTTCCTGGTCACGATGAAGGATGACTCCATCGA 3443 Query 104410 CGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA--AAGTGGGCTGGGGGTATT 104467 ||| ||||| | || || | | | | ||||| | ||| ||| ||| || || || Sbjct 3444 CGGCATCTACGACACCCTCAAG-ACT-TGCGCCATGATCAGCAAGACGGCCGGTGGCATC 3501 Query 104468 GGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAA 104527 ||| | |||| || | ||| || ||| ||| || || || || Sbjct 3502 GGGCTCAACATTCACTGCATCCGAGGCACCGGCTCTTACATTGCTGGAACCAACGGCGTC 3561 Query 104528 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAA 104587 || | || ||| |||| |||||||| || || ||| ||| || ||||| || | || Sbjct 3562 TCCAACGGCATTGTTCCCATGCTTCGAGTCTTCAACAACACCGCTCGCTACGTCGACCAG 3621 Query 104588 GCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATC 104644 | ||| ||| ||| || | || |||| ||||||| |||||| |||| || Sbjct 3622 GGTGGCAACAAGCGACCGGGGGCTTTTGCCATCTACATTGAGCCTTGGCACTCGGACGTC 3681 Query 104645 ATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTC 104704 | |||||||| || | | ||||| || | ||||||| || ||| || ||| Sbjct 3682 TTCGAGTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGAGCTC 3741 Query 104705 TTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGG 104764 |||| ||| || |||||||| || | ||||||||| |||| || ||| || | ||| Sbjct 3742 TTCTACGCCCTTTGGATTCCCGACTTGTTCATGAAGCGAGTCGAACAGAACGGAGAGTGG 3801 Query 104765 TCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAA 104824 || ||| | || || | || || ||||| |||| | | |||||||| || || Sbjct 3802 TCGCTCATGTGCCCCGCTGAGTGCCCCGGTCTTGCCGACGTCTATGGTGAGGAATTCGAG 3861 Query 104825 GCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGA-CTGCGACGGTGCCAGCTGCCGA 104883 ||||| ||| ||||||||| || ||||| || | || ||||| ||| | || Sbjct 3862 GCCCTCTACGAGAAGTACGAGCGCGAGGGTCGTGCTCGCCGC-ACGGTCAAGGCT-CAGA 3919 Query 104884 TG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACA 104942 | | ||| | || |||| || | || || |||||||| | || | ||||||||||| Sbjct 3920 AGCTCTGGTACGCCGTTCTGGAGGCCCAGACGGAGACTGGCAACCCTTTCATGCTTTACA 3979 Query 104943 AAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATC 105002 | ||||| |||| ||| || || ||||| | || ||||||| || || | Sbjct 3980 AGGACGCTGCCAACCGCAAGTCGAACCAGAAGAACCTCGGCACCATCAAGAACTCTAACC 4039 Query 105003 TCTGTACAGAAATC 105016 | || || || ||| Sbjct 4040 TTTGCACGGAGATC 4053 >seq2181 Length=22295 Score = 123 bits (136), Expect = 3e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||||||||||||| | |||| || || || ||||| |||||||||||||| |||| Sbjct 13591 CCTTTGCTGAGCGATTGATCGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCTGGGTCCT 13532 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 | | | || | |||||||||||||| ||||||||||| || ||| |||||||||| Sbjct 13531 TTGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTCACGTTCTCCAACG 13472 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 |||| ||| || |||||||| || ||| || |||||| Sbjct 13471 AGCTCATCAGCCGAGACGAGGGTCTGCACACCGACTTTGCG 13431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583239744285120