Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2399 206 3e-48 seq2114 163 3e-35 seq2269 158 1e-33 seq2456 140 4e-28 seq580 131 2e-25 seq2257 91.5 2e-13 >seq2399 Length=11591 Score = 206 bits (228), Expect = 3e-48 Identities = 903/1414 (64%), Gaps = 56/1414 (4%) Strand=Plus/Minus Query 80383 TACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTC 80442 |||||||| | |||||||||||||| ||||||| || ||||||||| ||| Sbjct 4646 TACAGGTTGCTCGTGTAAGGCTCAAAGCACTCGTTGAAGCCCAGGATCTGACTCGTCGAG 4587 Query 80443 GCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCG 80502 ||||||||||| || ||| |||||| || ||||| || |||||| || | | Sbjct 4586 GCCGTCGGCATAGGTGCGAGCAACAGCGAGTTCCGGAGACCGTGCGAGGCAATGTT---G 4530 Query 80503 CGCAAATCTGACCAAAAATCAACCCCAA----CGCTGTGA------CCCCACATGTCGTG 80552 ||| ||| | | || ||||| ||||| | | ||||||||||| Sbjct 4529 CGCT----TGATCTCAGCCCAGTCCCAAAGACCGCTGGGGGTAACGCACCACATGTCGTA 4474 Query 80553 CTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTT 80612 ||| | ||||| ||||| | ||| || | |||||||| | || | ||| Sbjct 4473 CTGGAGCTCGCCCTTGCTGGCCGGGCAGCCCTCGTATGTCTCGTAGGTCCCGAGCTCCTT 4414 Query 80613 GGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672 ||| ||||| ||||| | ||| || ||||| || ||| ||| |||| |||| Sbjct 4413 GGCAAGCTCGCACGATCGCTCAAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGAATGTT 4354 Query 80673 CA-CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCA 80731 | | | | |||| || ||| || | ||||||| |||||||| |||| || | Sbjct 4353 GAGCTTCTTG-GCCTCGGGACTGTCAAAGGCGTAGCCCATGATCATGAATGCGTCTGCGA 4295 Query 80732 GGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAA 80791 | || | || |||||| |||| |||||||||||| ||||||| || |||||| || | Sbjct 4294 GACCGTTGACTCCGATGCCGATGGGGCGGTGGCGCATGTTCGACTTCTTGGCCTCGGGCA 4235 Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851 ||||| |||| ||||||| ||| ||||||| || ||| || || | Sbjct 4234 CAGGGTAGTAGTTCACGTCGATGATCTTGTTGAGGTTGCCACAGACGACCTTGGTGACCT 4175 Query 80852 CATGAAGTTTCTGAAAGTCGAAT----------TGGTTCCCCT-TCACAA---ATGCCGG 80897 | ||||| |||| ||||| || ||||| | || || ||| || Sbjct 4174 CGTGAAGCTTCTTGAAGTCATATGTCCTCGTGTTGGTTTGCGAGTCGTAATGGATGTAGG 4115 Query 80898 AAGGCTCAGGGAC----GCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGA 80953 ||| || | || || ||||| || || ||||| || | | | | |||| | Sbjct 4114 TCGGCAGAGCCATACTGGCAAGGTTGCAGACAGCGACCTCGTCCGGAGCGCTGTACTCTA 4055 Query 80954 CGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGG 81013 ||| |||||||| | ||||| ||| || || || ||||| |||||||| |||||| Sbjct 4054 TGATCTCCGTGCAAAGGTTAGAGTTCTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGC 3995 Query 81014 CGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGA 81073 |||| |||||||||||| |||| | ||| | || ||||| ||| | || || | Sbjct 3994 GGTTGGCAGCGTCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCCGTCTGGGCCTCCAGAA 3935 Query 81074 TGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCG--GAATTTG-CCTTCGGCCACAT 81130 ||||| ||| | || | |||||| ||| |||| || | || ||| | | | Sbjct 3934 CGGCGTACCAGAGCTTCTGAGCCTTG---ACCGTGCGGCGAGCACGACCCTCGCGCTCGT 3878 Query 81131 ACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGT 81190 |||| |||| | ||||| | |||| | | || | || | |||||||| Sbjct 3877 ACTTCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCGGGGCACTCAG 3818 Query 81191 TAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGA 81250 |||||||| || ||| || || | || || ||||||||| ||| || | Sbjct 3817 CGGGGCACATGAGCGACCACTCTCCGTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAA 3758 Query 81251 TCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCA 81310 |||| |||||| ||| || || ||| ||| ||||||| | || ||||| | | Sbjct 3757 TCCAAAGGGCGTAGAAGAGCTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGA 3698 Query 81311 ACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCC- 81369 ||||| || || | || ||||| ||||| ||||| | || | ||| | | |||| Sbjct 3697 GGTCGAGGAACTCGAAGACGTCCGAGTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCG 3638 Query 81370 -TTGC-GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAG 81427 | || ||||||||||| |||||| || || || ||| || || || | ||| | Sbjct 3637 GTCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGG 3578 Query 81428 GGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCT 81487 | | || || | || ||||| || || | || || || || | || | Sbjct 3577 GAACAATGCCGTTGGAGACGCCGTTGGTTCCAGCAATGTAAGAGCCGGTGCCTCGGA--- 3521 Query 81488 TGC--TGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCA 81544 ||| ||| || || ||||||||||| | | ||| ||| || || || | Sbjct 3520 TGCAGTGAATGTTGAGCCCGATGCCACCGGCCGTCTTGCTGATCATGGCGCAAGTCTTGA 3461 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACA 81604 ||| || || || || |||||| || | ||||| | || ||| ||| ||||| Sbjct 3460 GGGTGTCGTAGATGCCGTCGATGGAGTCATCCTTCATCGTGACCAGGAAGCAGGATGACA 3401 Query 81605 TCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGT 81664 |||| || | || ||||||||||| || || || | ||||| |||| || | Sbjct 3400 TCTGGGGATTGGGTGTTCCGGCATTGAAGAGGGTGGGCGAGGCGTGGGTGAAGTACTTCT 3341 Query 81665 TTGACATCAGGTCATAGGTTTCCTTGACGCGTGG--AATATCGTCACCGTGAATACCGAT 81722 ||||| |||| || || || || || ||| ||| || |||||||| |||| Sbjct 3340 CCGACATGAGGTTGTAAGTGTCGATG--GCCTGGTCAATGTCCCGCCCGTGAATGCCGAC 3283 Query 81723 AGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 || || ||||| | ||| | || ||| ||||| Sbjct 3282 GGCGACTCGCATGAGCATATGTTGCGGCCTCTCG 3249 >seq2114 Length=91084 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| ||||||||||| || || || |||||||| || Sbjct 23152 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCA 23211 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || |||||||||||||| ||||| || ||||| Sbjct 23212 GACACCATCGACAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 23271 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || ||||| || ||||| || || || | ||||| || | ||||| || Sbjct 23272 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGTACTCTTTCGGACTACAAC 23331 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||||||||| || || || || | ||| ||||||| |||||||| || Sbjct 23332 ATCCAAAAGGAGTCGACACTCCACTTGGTCCTGCGTCTCCGCGGTGGCCA 23381 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || ||||| ||||| |||||||| ||||| || ||||| ||||| || | ||| | Sbjct 18865 GTTAAGACTCTTACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCAGACACCATCGAC 18806 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || |||||||||||||| |||||||| ||||| || ||||| || Sbjct 18805 AATGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGATC 18746 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||| || ||||| || ||||| | ||| || || | ||||| || |||||||||| Sbjct 18745 TTTGCCGGCAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAACATCCAAAAGGAG 18686 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| || | ||| | ||||| || ||||| Sbjct 18685 TCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGG 18651 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| ||||||||||| || || || ||||| ||||| Sbjct 22924 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCA 22983 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| | || || |||||||||||||| ||||| || ||||| Sbjct 22984 GACACCATTGACAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAA 23043 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || ||||| || ||||| | ||| || || | ||||| || Sbjct 23044 CAACGTCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAAC 23103 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | ||| | || || |||||||| Sbjct 23104 ATCCAGAAGGAGTCGACACTCCACTTGGTCCTTCGCCTGCGCGGTGG 23150 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || |||||||| ||| Sbjct 18421 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCATCG 18362 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || || ||||||||||| ||||| || ||||| Sbjct 18361 GACACAATCGACAACGTAAAGACGAAGATCCAAGACAAGGAGGGCATTCCCCCGGACCAA 18302 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || |||||||| ||||| | || ||||| | ||||| || Sbjct 18301 CAGCGCCTCATCTTCGCAGGCAAGCAACTTGAGGACGGCCGCACCCTCTCTGACTACAAC 18242 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| ||||| || || | || | ||||| |||||||| || Sbjct 18241 ATTCAGAAGGAGTCCACACTCCACTTGGTGCTCCGTCTCCGCGGTGGCCA 18192 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || ||||| |||||||||||||| || || || ||||| ||||| |||| ||| | Sbjct 22708 GTTAAGACTCTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCAGATACCATCGAC 22767 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| || ||||| ||||| |||||||| || Sbjct 22768 AACGTCAAGACCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAACAGCGTCTCATC 22827 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| || ||||||| || ||||| | ||||| || |||||||||| Sbjct 22828 TTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAAAAGGAG 22887 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | ||| | || || || ||||| Sbjct 22888 TCGACCCTCCACTTGGTCCTTCGCCTGCGTGGTGG 22922 >seq2269 Length=80277 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| || || |||||||| || || || ||||| |||||| Sbjct 52415 ATCATGCAGATCTTTGTGAAGACTCTCACAGGCAAGACGATCACCCTCGAGGTGGAGTCA 52474 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | |||| || | ||| | || || || ||||||||||| || ||||| ||| Sbjct 52475 TCCGACACGATTGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGCATCCCTCCGGAC 52534 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || |||||||| || ||||| || ||||| ||||| || | || || || | ||||| Sbjct 52535 CAACAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGAACGCTGTCGGACTAC 52594 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| |||||||| || || || || ||| ||||||| ||||| || Sbjct 52595 AACATCCAGAAGGAATCGACCCTGCACCTCGTCCTGCGTCTGCGCGGCGG 52644 >seq2456 Length=10261 Score = 140 bits (154), Expect = 4e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 1320 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAGGTGGAGTCCTCC 1261 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 1260 GACACCATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGGATCCCCCCGGACCAG 1201 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || ||||| || || || |||||||| | || || || ||| ||||| || Sbjct 1200 CAGCGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGACGGACGCTGAGC-GACTACAA 1142 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 |||| ||||| ||| |||||||| ||| Sbjct 1141 CATCCAGAAGGAGAGCACCCTTCATCTGGTC 1111 >seq580 Length=47424 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || || ||||| ||||| Sbjct 27535 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCC 27594 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || ||||||||||||||||| || || |||||| Sbjct 27595 GACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 27654 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| |||||||| | || || || | ||||| || Sbjct 27655 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAAC 27714 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || || || ||||| Sbjct 27715 ATCCAGAAGGAGTCGACCCTCCACCTCGTGCTTCGCCTGCGTGGTGG 27761 >seq2257 Length=17672 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 30355 GAAAAAATCTGGATCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAAC 30414 ||||| || | ||||| || || || || || ||||| | ||| ||||||||| || Sbjct 9466 GAAAAGATTTACATCCCAGAGCTGATCTTCGGACACCTGCTTACATCGTCCAACTACGAC 9525 Query 30415 GACGAGGA-GCAGCGCGTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAA 30470 |||||||| ||| | ||||| |||||||| || ||||||||||||||||| ||||| Sbjct 9526 GACGAGGAGGCAAAG-GTGACTGGTGGACGCAACGGCTACGGTGCAAAGCTGGCCAA 9581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570289811794560