Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2114 127 1e-24 seq2269 125 4e-24 seq2456 109 3e-19 seq580 102 5e-17 >seq2114 Length=91084 Score = 127 bits (140), Expect = 1e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||| || ||||||||| ||||| || || ||||| || || Sbjct 23369 AGACGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTACGG 23310 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||| || || |||||||| || || |||||||||||||| || | |||||| Sbjct 23309 CCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGGGGAATGCCCTCC 23250 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| ||||| || || | || |||||| || || || | ||| Sbjct 23249 TTGTCCTGGATC-TTTGTCTTGACATTGTCGATGGTGTCTGAAGATTCAACCTCGAGGGT 23191 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | ||| || || || |||||||| Sbjct 23190 GATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 23152 Score = 116 bits (128), Expect = 2e-21 Identities = 161/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| ||| |||||| |||||||| || || || || || || Sbjct 18204 AGACGGAGCACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGG 18263 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| |||||||| || || || || || | |||||||||||||| || | |||||| Sbjct 18264 CCGTCCTCAAGTTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCCGGGGGAATGCCCTCC 18323 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 |||||| |||| || || || ||| | |||||||| || | || || || | | Sbjct 18324 TTGTCTTGGATC-TTCGTCTTTACGTTGTCGATTGTGTC--CGATGATTCAACCTCGAGG 18380 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| | || || || || |||||||| Sbjct 18381 GTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 18421 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| || |||||| || ||||| || || || || || || |||| ||| Sbjct 23132 ACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCA 23073 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || ||||| || || | ||| |||||||||||||| | ||||||||||| | Sbjct 23072 AGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGG 23013 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| ||||| || || | ||| |||||| ||| || || | ||| || || || Sbjct 23012 ATC-TTTGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGATGGTCTT 22954 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| || || || |||||||| Sbjct 22953 GCCGGTCAGCGTCTTGACGAAGATCTGCAT 22924 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||||||| ||||||||| ||||| || || || || || || Sbjct 18660 AGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTGCGA 18719 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || |||||||| || | ||| ||||||||||| || | |||||| Sbjct 18720 CCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCC 18779 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 18780 TTGTCCTGGATCTT 18793 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| || |||||| || ||||| || || ||||| || || Sbjct 18432 AGACGGAGGACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGG 18491 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || || ||||| || || | ||||||||||||||| || | ||||| Sbjct 18492 CCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCCGGGGGAATGCCCTCT 18551 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || || || || | ||| |||||| || ||||| | || Sbjct 18552 TTGTCCTGGATC-TTGGTCTTGACATTGTCAATGGTGTCTGAAGATTCGACTTCGAGCGT 18610 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || | || || || || |||||||| Sbjct 18611 GATCGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 18649 Score = 95.1 bits (104), Expect = 8e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| || ||||||||| ||||| || || ||||| || || | || ||| Sbjct 22904 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCA 22845 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || ||||| || || | ||||||||||||||| || | ||||||||||| | Sbjct 22844 AGCTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGG 22785 Query 34618 ATCTT 34622 ||||| Sbjct 22784 ATCTT 22780 >seq2269 Length=80277 Score = 125 bits (138), Expect = 4e-24 Identities = 171/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| || | || || || ||||| || ||||| || || || Sbjct 52644 CCGCCGCGCAGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAC 52585 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||| || || || |||||||| || | ||||||||||||||| || Sbjct 52584 AGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGG 52525 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || || || ||| | ||| ||||| |||||| Sbjct 52524 ATGCCCTCCTTGTCTTGGATC-TTGGTCTTGACGTTGTCAATCGTGTCGGATGACTCCAC 52466 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTG 34714 || | ||| ||||| || || || | || |||||||| ||||||||| || ||| Sbjct 52465 CTCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCATGATGTTTG 52410 >seq2456 Length=10261 Score = 109 bits (120), Expect = 3e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| ||| || ||||||||||| || ||||| || || || || || |||| || Sbjct 1112 ACCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCG 1171 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || ||||| |||||||| || | ||||| |||||||| || | ||||||||||| | Sbjct 1172 AGCTGTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGG 1231 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || || || ||| | || ||||| | |||||| || | ||| ||||| || Sbjct 1232 ATC-TTGGTCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTT 1290 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| | || || || || |||||||| ||| Sbjct 1291 GCCGGTGAGGGTCTTGACGAAGATCTGCATCTTG 1324 >seq580 Length=47424 Score = 102 bits (112), Expect = 5e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| || ||||| || || ||||| || || |||| || || || Sbjct 27737 TGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGC 27678 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| |||||||| || | |||||||||||| |||| || Sbjct 27677 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATC-TT 27619 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | || ||||| |||||| || | ||| ||||| || || || Sbjct 27618 GGTCTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGT 27559 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || || |||||||||||| || Sbjct 27558 GAGGGTCTTGACGAAAATCTGCATGCTG 27531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314718522304904