Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2114 136 3e-27 seq580 105 6e-18 >seq2114 Length=91084 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || || ||| | || Sbjct 23152 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCA 23211 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||| || || ||||| || ||||| || || || ||| Sbjct 23212 GACACCATCGACAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 23271 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||||| || | |||||| | || |||| || |||||| Sbjct 23272 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGTACTCTTTCGGACTACAAC 23331 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || |||||||||||||| | || ||||| ||||| | || |||||| Sbjct 23332 ATCCAAAAGGAGTCGACACTCCACTTGGTCCTGCGTCTCCGCGGTGGC 23379 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || || || | || Sbjct 22924 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCA 22983 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||| || || ||||| || ||||| || || || ||| Sbjct 22984 GACACCATTGACAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAA 23043 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| || || | || ||| || || | ||||| |||||| Sbjct 23044 CAACGTCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAAC 23103 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || ||||| | || |||| ||||| || Sbjct 23104 ATCCAGAAGGAGTCGACACTCCACTTGGTCCTTCGCCTGCGCGGTGGTAT 23153 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || || ||| | || Sbjct 18421 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCATCG 18362 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || |||||||| || ||||| || || || ||| Sbjct 18361 GACACAATCGACAACGTAAAGACGAAGATCCAAGACAAGGAGGGCATTCCCCCGGACCAA 18302 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| ||| | || ||| | ||| | || || |||||| Sbjct 18301 CAGCGCCTCATCTTCGCAGGCAAGCAACTTGAGGACGGCCGCACCCTCTCTGACTACAAC 18242 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||||| || | || ||||| | ||| | || |||||| Sbjct 18241 ATTCAGAAGGAGTCCACACTCCACTTGGTGCTCCGTCTCCGCGGTGGC 18194 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || ||||| ||||||||| | || || || || || || | || || | || || Sbjct 22708 GTTAAGACTCTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCAGATACCATCGAC 22767 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || || || ||||| || || || || || || ||||||||| | || Sbjct 22768 AACGTCAAGACCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAACAGCGTCTCATC 22827 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | |||||| || || | || || | ||| ||||||| |||||||| ||||||||| Sbjct 22828 TTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAAAAGGAG 22887 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| | || ||||| | || |||| ||||| || Sbjct 22888 TCGACCCTCCACTTGGTCCTTCGCCTGCGTGGTGGTAT 22925 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || ||||| || |||||| | ||||| || || || || | || ||| | || || Sbjct 18865 GTTAAGACTCTTACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCAGACACCATCGAC 18806 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || || || ||||| || ||||| || || || ||||| ||| | || Sbjct 18805 AATGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGATC 18746 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | |||||||| || | || ||| || || | ||||| |||||||| ||||||||| Sbjct 18745 TTTGCCGGCAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAACATCCAAAAGGAG 18686 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || | || ||||| | ||| | || ||||| || Sbjct 18685 TCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGGTAT 18648 >seq580 Length=47424 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || ||| | || || || || ||||| | || Sbjct 27534 CATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTC 27593 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| || | ||||| || || || ||||| || || || || || || || Sbjct 27594 CGACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCA 27653 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || | || ||| | || |||| || ||||| Sbjct 27654 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAA 27713 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||||||| | || | || | || |||| ||||| Sbjct 27714 CATCCAGAAGGAGTCGACCCTCCACCTCGTGCTTCGCCTGCGTGGTGG 27761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434902699445760