Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2114 179 9e-40 seq580 170 4e-37 seq2269 167 5e-36 seq2456 154 3e-32 >seq2114 Length=91084 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| ||||||||||| || |||| ||| || | || ||| Sbjct 23363 AGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCT 23304 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| | ||| |||||||| || |||| || ||||||||| Sbjct 23303 TCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC 23244 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || ||||||||||| || |||||||||||| ||||| ||| Sbjct 23243 TGGATCTTTGTCTTGACATTGTCGATGGTGTCTGAAGATTCAACCTCGAGGGTGATGGTC 23184 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 23183 TTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 23152 Score = 167 bits (184), Expect = 5e-36 Identities = 157/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| ||||||||||| ||||||||||| || || | || || | || || Sbjct 18666 AGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCC 18725 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || ||||||||||| ||||||| || ||||||||| Sbjct 18726 TCAAGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCC 18785 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| ||| || |||||||| || || ||| Sbjct 18786 TGGATCTTGGTCTTGACATTGTCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATGGTC 18845 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || || |||||||| || Sbjct 18846 TTGCCAGTAAGAGTCTTAAC 18865 Score = 167 bits (184), Expect = 5e-36 Identities = 157/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| ||||||||||| || || | |||||| | ||||| Sbjct 22907 AGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 22848 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || |||||||| ||||| | || ||||||||| Sbjct 22847 TCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCC 22788 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||| || ||| || |||||||| ||||| ||| Sbjct 22787 TGGATCTTGGTCTTGACGTTGTCGATGGTATCTGAGGACTCGACCTCGAGGGTGATGGTC 22728 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || || |||||||| || Sbjct 22727 TTGCCGGTAAGAGTCTTAAC 22708 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||| || || ||||| || || | ||||| | || || Sbjct 18210 AGCACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCGTCC 18269 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||||||||||||||| ||||| |||||||| || |||| || |||||||| Sbjct 18270 TCAAGTTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCT 18329 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || |||||||||||| ||||| ||| Sbjct 18330 TGGATCTTCGTCTTTACGTTGTCGATTGTGTCCGATGATTCAACCTCGAGGGTGATGGTC 18389 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 18390 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 18421 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| || |||||||| || |||| ||| || | || ||| Sbjct 18438 AGGACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCT 18497 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || |||||||| || |||| || || |||||| Sbjct 18498 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCCGGGGGAATGCCCTCTTTGTCC 18557 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||| || ||| || ||||| ||||||||| Sbjct 18558 TGGATCTTGGTCTTGACATTGTCAATGGTGTCTGAAGATTCGACTTCGAGCGTGATCGTC 18617 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 18618 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 18649 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| || |||||||| || || | || || | || || Sbjct 23135 AGGACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCC 23076 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || ||||||||||| || |||| || ||||||||| Sbjct 23075 TCAAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTGTCC 23016 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || || |||||||| || || |||||||| ||||| ||| Sbjct 23015 TGGATCTTTGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGATGGTC 22956 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 22955 TTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 22924 >seq580 Length=47424 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| ||| || | || || Sbjct 27746 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 27687 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || ||||| || || | ||| ||||||||| Sbjct 27686 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCC 27627 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || |||||||| ||||||||| Sbjct 27626 TGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATCGTC 27567 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 27566 TTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 27535 >seq2269 Length=80277 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || || || || |||||||| || |||| || || | || ||| Sbjct 52629 AGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGACAGCGTTCGGCCGTCT 52570 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || |||||||| ||||| | || |||||||| Sbjct 52569 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCT 52510 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || || ||||| || || |||||||| ||||||||| Sbjct 52509 TGGATCTTGGTCTTGACGTTGTCAATCGTGTCGGATGACTCCACCTCGAGGGTGATCGTC 52450 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| ||||| | |||||| Sbjct 52449 TTGCCTGTGAGAGTCTTCACAAAGATCTGCAT 52418 >seq2456 Length=10261 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| ||| ||| || |||||||| || || || |||| ||| || Sbjct 1109 AGGACCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCC 1168 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || || ||||| || || || ||||| || || | || ||||||||| Sbjct 1169 TCGAGCTGTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCC 1228 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| ||| || |||||||| ||||||||| Sbjct 1229 TGGATCTTGGTCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTC 1288 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| || || | |||||| || Sbjct 1289 TTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTT 1323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159109108478120