Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2456 102 7e-17 seq580 84.2 2e-11 >seq2456 Length=10261 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || |||||||| || || || || || ||| || || ||| |||| || Sbjct 1112 ACCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCG 1171 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 |||||||| || ||||| || || ||||||||||| | ||| | | ||| |||||| | Sbjct 1172 AGCTGTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGG 1231 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | || ||| |||||||| || | ||||| | || Sbjct 1232 ATCTTGGTCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTT 1290 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || || || || || || ||||| |||||||| Sbjct 1291 GCCGGTGAGGGTCTTGACGAAGATCTGCATCTT 1323 >seq580 Length=47424 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || | ||| || || |||| || ||||| ||||| || || Sbjct 27726 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 27667 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | ||| | | ||| |||||| ||| || |||| ||| Sbjct 27666 GATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGT 27608 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||| ||| |||||||| || | ||||| | || ||||| || || || | Sbjct 27607 TGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 27548 Query 39272 CAAAGATTTGCAT 39284 | || || ||||| Sbjct 27547 CGAAAATCTGCAT 27535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429530481068744