Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2456 168 2e-36 seq580 168 2e-36 seq2114 163 7e-35 seq2269 159 8e-34 seq2862 86.0 2e-11 seq191 86.0 2e-11 >seq2456 Length=10261 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || |||||||||||||||||||| ||| ||| Sbjct 1317 CAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAGGTGGAGTCCTCCGAC 1258 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 1257 ACCATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGGATCCCCCCGGACCAGCAG 1198 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||||||||||||||| || ||| |||| || ||| || ||| || Sbjct 1197 CGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGACGGACGCTGAGCGACTACAACATC 1138 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || Sbjct 1137 CAGAAGGAGAGCACCCTTCATCTGGT 1112 >seq580 Length=47424 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || |||||||||||||||||||| || ||| Sbjct 27538 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCCGAC 27597 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || |||||||| ||||||||||| Sbjct 27598 ACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAG 27657 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | |||||| | || || ||| || Sbjct 27658 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATC 27717 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 27718 CAGAAGGAGTCGACCCTCCACCTCGT 27743 >seq2114 Length=91084 Score = 163 bits (180), Expect = 7e-35 Identities = 155/197 (79%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 177932 CGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGA 177991 ||| || ||||| || || || || |||||||||||||| || |||||| |||||||| Sbjct 22707 CGTTAAGACTCTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCAGATACCATCGA 22766 Query 177992 GAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTAT 178051 |||||||| ||||| |||||||| || || |||||||||||||| || || || || Sbjct 22767 CAACGTCAAGACCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAACAGCGTCTCAT 22826 Query 178052 CTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 |||||||||||| ||||| || ||||| | || ||| |||| || ||| ||||||| || Sbjct 22827 CTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAAAAGGA 22886 Query 178112 ATCAACACTGCATCTTG 178128 || || || || |||| Sbjct 22887 GTCGACCCTCCA-CTTG 22902 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||||||||| ||| |||||| Sbjct 23155 CAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCAGAC 23214 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||| |||||||| || || || || |||||||| || Sbjct 23215 ACCATCGACAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAG 23274 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || ||||| ||||| || | |||||| | || || ||| || Sbjct 23275 CGCTTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGTACTCTTTCGGACTACAACATC 23334 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || ||||| || |||| Sbjct 23335 CAAAAGGAGTCGACACTCCA-CTTG 23358 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || |||||||| ||||| || ||| |||||| Sbjct 18646 CAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAAGTCGAATCTTCAGAC 18587 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| ||||||||||| || || || |||||||| || Sbjct 18586 ACCATTGACAATGTCAAGACCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAACAG 18527 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||||||||| || | |||||| | || || ||| || Sbjct 18526 CGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTCTTTCGGACTACAACATC 18467 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 18466 CAGAAGGAGTCTACGCTCCA-CTTG 18443 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||||||||| || |||||| Sbjct 22927 CAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCAGAC 22986 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||| |||||||| || || || || |||||||| ||| Sbjct 22987 ACCATTGACAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAACAA 23046 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| || || || | || || |||| || ||| || Sbjct 23047 CGTCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAACATC 23106 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || ||||| || |||| Sbjct 23107 CAGAAGGAGTCGACACTCCA-CTTG 23130 Score = 140 bits (154), Expect = 8e-28 Identities = 150/197 (76%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 177932 CGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGA 177991 ||| || ||||| || || || || || ||||||||||| || ||||||||||||||| Sbjct 18866 CGTTAAGACTCTTACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCAGACACCATCGA 18807 Query 177992 GAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTAT 178051 || ||||| ||||| |||||||| || || || ||||||||||| ||||| || || Sbjct 18806 CAATGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGAT 18747 Query 178052 CTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 ||| ||||| || ||||| || || || | || || |||| || ||| ||||||| || Sbjct 18746 CTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAACATCCAAAAGGA 18687 Query 178112 ATCAACACTGCATCTTG 178128 || || || || |||| Sbjct 18686 GTCCACTCTCCA-CTTG 18671 Score = 109 bits (120), Expect = 1e-18 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||||||||| ||| || ||| Sbjct 18418 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCATCGGAC 18359 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| || ||||| || || || || |||||||| || Sbjct 18358 ACAATCGACAACGTAAAGACGAAGATCCAAGACAAGGAGGGCATTCCCCCGGACCAACAG 18299 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || || || || || || | || || | || || ||| | Sbjct 18298 CGCCTCATCTTCGCAGGCAAGCAACTTGAGGACGGCCGCACCCTCTCTGACTACAACATT 18239 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || ||||| || |||| Sbjct 18238 CAGAAGGAGTCCACACTCCA-CTTG 18215 >seq2269 Length=80277 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||||||||| || |||||||||||||||||||| || ||| Sbjct 52421 CAGATCTTTGTGAAGACTCTCACAGGCAAGACGATCACCCTCGAGGTGGAGTCATCCGAC 52480 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| || ||||| || || |||||||||||||| || Sbjct 52481 ACGATTGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAACAG 52540 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||||||||| || | || || | || || ||| || Sbjct 52541 CGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGAACGCTGTCGGACTACAACATC 52600 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || ||||| || || Sbjct 52601 CAGAAGGAATCGACCCTGCACCTCGT 52626 >seq2862 Length=5475 Score = 86.0 bits (94), Expect = 2e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 68750 TCTTGCCGCTGCCATCGAGTACATCATCGCCGAGATCCTTGAGCTTGCCGGAAACGCCGC 68809 |||||| || | | | |||||| ||| |||||||||||||||||||||||||| ||||| Sbjct 2926 TCTTGCTGCCGTCCTTGAGTACCTCACAGCCGAGATCCTTGAGCTTGCCGGAAATGCCGC 2867 Query 68810 TCGTGACTCAAAGAAGG 68826 ||||||| ||||||| Sbjct 2866 TCGTGACAACAAGAAGG 2850 >seq191 Length=54205 Score = 86.0 bits (94), Expect = 2e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 68750 TCTTGCCGCTGCCATCGAGTACATCATCGCCGAGATCCTTGAGCTTGCCGGAAACGCCGC 68809 |||| |||| | | |||||||| ||| |||||||||||||||||||| ||||| ||||| Sbjct 46458 TCTTCCCGCCGTCCTCGAGTACCTCACAGCCGAGATCCTTGAGCTTGCTGGAAATGCCGC 46399 Query 68810 TCGTGACTCAAAGAAGG 68826 ||||||| ||||||| Sbjct 46398 TCGTGACAACAAGAAGG 46382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203686658936272