Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2114 158 1e-33 seq580 154 1e-32 seq2269 140 3e-28 seq2456 138 1e-27 >seq2114 Length=91084 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||||| || || ||| ||||||||||||||| ||||| || Sbjct 18194 GCCACCGCGGAGACGGAGCACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGA 18253 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| || || |||||||| ||||| || |||||||||||||||| ||| Sbjct 18254 GAGGGTGCGGCCGTCCTCAAGTTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCCGGGGG 18313 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||||||| ||| || ||| ||| | | | ||||| || || | Sbjct 18314 AATGCCCTCCTTGTCTTGGATCTTCGTCTT-TACGTTGTCGATTGTGTCCGATGATTCAA 18372 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || ||||| ||||| ||||| |||||||| Sbjct 18373 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 18421 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||| || || || ||||||||| ||||| ||||||||| Sbjct 23150 CCACCGCGCAGGCGAAGGACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAG 23091 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || |||||||| |||||||| || || || |||||||||| ||| Sbjct 23090 AGCGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGA 23031 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| ||| ||| || | | | ||||| ||||| || Sbjct 23030 ATGCCCTCCTTGTCCTGGATCTTTGTCTT-GACATTGTCAATGGTGTCTGAAGACTCGAC 22972 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||||||||| ||||| |||||||| Sbjct 22971 CTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 22924 Score = 143 bits (158), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||| || || || |||||| || ||||| ||||| || Sbjct 23379 GCCACCGCGGAGACGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGA 23320 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || |||||||||||||| || |||| |||||||||||||| ||| Sbjct 23319 AAGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGGGG 23260 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 || || |||||||||| ||| ||| ||| || | || | ||||| || || Sbjct 23259 AATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCG--ATGGTGTCTGAAGATTCA 23202 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || ||||||||||| ||||| |||||||| Sbjct 23201 ACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 23152 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || ||||| ||||||||| ||||| ||||| || Sbjct 18423 CCACCACGGAGACGGAGGACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAA 18482 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| |||||||||||||||||||| || || ||||||||||||| |||| Sbjct 18483 AGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCCGGGGGA 18542 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||| |||||| ||| || ||| || | | | ||||| || || || Sbjct 18543 ATGCCCTCTTTGTCCTGGATCTTGGTCTT-GACATTGTCAATGGTGTCTGAAGATTCGAC 18601 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| ||||| || || ||||| ||||| ||||| |||||||| Sbjct 18602 TTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 18649 Score = 122 bits (134), Expect = 8e-23 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| |||||| || ||||| ||||||||| Sbjct 18651 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAG 18710 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || |||||||||||||| || ||||| || |||||||||| ||| Sbjct 18711 AGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGA 18770 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | ||||| ||||| | Sbjct 18771 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCG--ATGGTGTCTGAGGACTCGA 18828 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 |||| | || || || || || || || ||||| ||| Sbjct 18829 CCTCGAGGGTAATGGTCTTGCCAGTAAGAGTCTTAACG 18866 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 |||||| || ||||| |||||||| |||||||| | || || |||||||| |||||||| Sbjct 22887 CTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAA 22828 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 || || ||||||||||||| || | | |||||||||| ||| || Sbjct 22827 GATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTT 22780 >seq580 Length=47424 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || || || || ||||||||| ||||| ||||| || Sbjct 27761 CCACCACGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 27702 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||||||||| || || ||||| ||||||| ||| Sbjct 27701 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 27642 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | |||||| |||||||| Sbjct 27641 ATTCCCTCCTTGTCCTGGATCTTGGTCTT-GACGTTGTCGATCGTGTCGGAAGACTCCAC 27583 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || ||||| || ||||| || ||||| ||||||||||||||| Sbjct 27582 CTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 27534 >seq2269 Length=80277 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | || || ||||| || |||||||| ||||| ||||| || Sbjct 52644 CCGCCGCGCAGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAC 52585 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||||||||| || || || ||||||||||||| || Sbjct 52584 AGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGG 52525 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||| ||| | | | |||||| |||||||| Sbjct 52524 ATGCCCTCCTTGTCTTGGATCTTGGTCTT-GACGTTGTCAATCGTGTCGGATGACTCCAC 52466 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || ||||| || || || || ||||| || || ||||||||| Sbjct 52465 CTCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCATG 52417 >seq2456 Length=10261 Score = 138 bits (152), Expect = 1e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||||||| || |||||||||||||| ||||| |||||| || || || |||| ||| Sbjct 1112 ACCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCG 1171 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || || || ||||| ||||||| ||| | | |||||||||| | Sbjct 1172 AGCTGTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGG 1231 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||| ||| | | | |||||| ||||||||||| | || ||||| || Sbjct 1232 ATCTTGGTCTT-GACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTT 1290 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || ||||| ||||| |||||||| || Sbjct 1291 GCCGGTGAGGGTCTTGACGAAGATCTGCATCTT 1323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462287310825600