Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2146 152 6e-32 seq2057 149 7e-31 >seq2146 Length=21837 Score = 152 bits (168), Expect = 6e-32 Identities = 424/648 (65%), Gaps = 2/648 (0%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 || || || ||| | || ||||| | |||||||||||||| | | ||||| ||||| Sbjct 16176 CCGGGGCACTCAGCGGGGCACATGAGCGACCACTCTCCGTTCTGTTCGACTCGCTTCATG 16117 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || | || ||||||||||| || || || || | || | | ||||| || || Sbjct 16116 AACAAGTCGGGAATCCAAAGGGCGTAGAAGAGCTCACGGGCGCGAACCTCCTCCTTGCCG 16057 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| | || ||||||||| | | | || || ||||| || || | ||| ||| Sbjct 16056 TGGTTCTTCCTGAGGTCGAGGAACTCGAAGACGTCCGAGTGCCAAGGCTCAATGTAGATG 15997 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | || || || ||||| || ||||| || | ||| | ||||||||| || | Sbjct 15996 GCAAAAGCCCCCGGTCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAG 15937 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 |||| | ||| |||| ||| || ||||| | || ||||| || | || || || Sbjct 15936 ACTCGAAGCATGGGAACAATGCCGTTGGAGACGCCGTTGGTTCCAGCAATGTAAGAGCCG 15877 Query 54281 CTGGCACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 || | || || | | | || | || || || || || ||| | || ||| | || Sbjct 15876 GTGCCTCGGAT-GCAGTGAATGTTGAGCCCGATGCCACCGGCCGTCTTGCTGATCATGGC 15818 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 ||| || | || || |||||||| || || |||||| |||| | | || || Sbjct 15817 GCAAGTCTTGAGGGTGTCGTAGATGCCATCGATGGAGTCATCCTTCATCGTGACCAGGAA 15758 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 ||| ||||| ||| | ||||| ||||| || | ||| || || ||||| || Sbjct 15757 GCAGGATGACATCTGGGGGTTGGGTGTTCCGGCATTGAAGAGGGTGGGCGAGGCGTGGGT 15698 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATG 54519 || | || || || | || ||||| || ||||| || ||| || |||| || Sbjct 15697 GAAGTACTTCTCCGACATGAGGTTGTAAGTGTCGATGGCCTGGTCAATGTCCCGCCCGTG 15638 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 ||| || || ||||| ||||| | ||| || || || || || ||| |||| ||| || Sbjct 15637 AATGCCGACGGCGACTCGCATGAGCATATGTTGCGGCCTCTCGGCGACCTTGCCGTTAAT 15578 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||||| || || || | ||| || || || || ||||| || Sbjct 15577 GCGCAGCAGATAAGAGCGCTCGAGAGTCTTGAAGCCGAAGTAGTTCTA 15530 >seq2057 Length=22280 Score = 149 bits (164), Expect = 7e-31 Identities = 371/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| ||||||||||||| || || | |||||||| |||||||| Sbjct 16417 CACGCAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTGGAGAACGTGAGG 16476 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| || || ||||| || ||||| || ||||| ||||| || ||||| ||||| Sbjct 16477 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGACCCAGAGAAGAAG 16536 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-ACCG--GCGCTGTCATGT 24311 || || || || || || ||||| || | || || || | || || |||| | Sbjct 16537 ATGCCCTCCACGGCGGCGAAGGCGATCAATCGCTCAGCAAAGGTCGATTCGGTGTCGTTG 16596 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||||| ||||| |||||||| | || || ||| || ||||| || |||| | Sbjct 16597 ATCCACCGCATGGCCCACTCGGCCTTTTGCTTGACGACAGGGATGGTCTCCATGGCATCA 16656 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 ||||| || | || | | || || ||||| || || | ||| || | Sbjct 16657 AAGAGGTACTCGCGTTGCTGAGGGTCGCGAATGTATGTGTCGATGAGCAGAGAGTATGTC 16716 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 ||||| |||||||| || || || || || |||||||| |||| |||||| | Sbjct 16717 TCCGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCTGCTGCT 16776 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || || || || ||| || || | | || || || || || ||||| ||||| Sbjct 16777 TGCACCTCCGAACTAAACCGCTCGACGAGGTTCTCGTTGACAATACCGTCTGATGCTGCG 16836 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGT--TTATTCCA 24607 || || || | || || | ||||| | || | || ||| | | || | ||| Sbjct 16837 AAGAAGGCGAGGACGTGGCTGATAAAGTGACGCTCAT-TGTCGTTCAACTTGTTGTCCCA 16895 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 || | || || || || | || | || || | ||||| || |||||||||||||| Sbjct 16896 GTCGTGCATGTCCTTGGAAAGGTCGATCTCCTCAGCAGTCCAGAACGATGCCTCTGCCTT 16955 Query 24668 TTTATACATATTCCAGAT 24685 || ||||| | |||||| Sbjct 16956 CTTGTACATTTGCCAGAT 16973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593694986429280