Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2146 98.7 2e-15 seq23 89.7 1e-12 >seq2146 Length=21837 Score = 98.7 bits (108), Expect = 2e-15 Identities = 370/577 (64%), Gaps = 5/577 (1%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| || || ||| || ||||| || ||| | |||||| ||| || | Sbjct 15545 TTCAAGACTCTCGAGCGCTCTTATCTGCTGCGCATTAACGGCAAGGTCGCCGAGAGGCCG 15604 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 || || ||| | |||||||| || ||||| |||||| | ||||| || | || Sbjct 15605 CAACATATGCTCATGCGAGTCGCCGTCGGCATTCACGGGCGGGACATTGACCAGGCCATC 15664 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 || || |||| | ||| || | | || || ||| | || || |||||||| Sbjct 15665 GACACTTACAACCTCATGTCGGAGAAGTACTTCACCCACGCCTCGCCCACCCTCTTCAAT 15724 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 ||||| || |||| ||| || || ||||| || | | ||| | || ||||| Sbjct 15725 GCCGGAACACCCAACCCCCAGATGTCATCCTGCTTCCTGGTCACGATGAAGGATGACTCC 15784 Query 249073 GTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGG 249131 |||| ||||| || ||||| || || || || | | ||| || || || || Sbjct 15785 ATCGATGGCATCTACGACACCCTCAAGACTTGCGCC-ATGATCAGCAAGACGGCCGGTGG 15843 Query 249132 AATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGG 249191 ||||| ||| | | | |||||||| | || || ||||| || || || || Sbjct 15844 CATCGGGCTCAACATTCACTGCATCCGAGGCACCGGCTCTTACATTGCTGGAACCAACGG 15903 Query 249192 GGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAA 249251 ||| | || || || ||| | |||||| ||| | |||||| | | | || | Sbjct 15904 CGTCTCCAACGGCATTGTTCCCATGCTTCGAGTCTTCAACAACACCGCTCGCTACGTCGA 15963 Query 249252 CCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGA 249308 ||||| || | ||| |||| | || ||||| || | || |||||| | || Sbjct 15964 CCAGGGTGGCAACAAGCGACCGGGGGCTTTTGCCATCTACATTGAGCCTTGGCACTCGGA 16023 Query 249309 TATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGA 249368 | || |||||||| ||| | | |||||| ||||||| ||| | | || ||||| Sbjct 16024 CGTCTTCGAGTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGA 16083 Query 249369 CCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 |||||||||| ||| ||| | |||||||||||||| Sbjct 16084 GCTCTTCTACGCCCTTTGGATTCCCGACTTGTTCATG 16120 >seq23 Length=8581 Score = 89.7 bits (98), Expect = 1e-12 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| |||| || |||||||||||||| || |||||||| || || ||||| Sbjct 6741 TGCTCTTCTACGGCGGCCCAGGAACAGGCAAGACATCCACCATCCTCGCCCTCGCCCGCC 6800 Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAAC 254130 || || ||| || | | | ||||| |||||||| ||||| || ||||| | Sbjct 6801 AACTCTTCGGCCCGGACCTCTTCCGCTCCCGCGTCCTCGAGCTCAACGCCTCCGACGAGC 6860 Query 254131 GCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATG 254177 |||| | |||||||||||| |||||||||| || ||||| || Sbjct 6861 GCGGCATCTCCGTCGTCCGCGAGAAGATCAAGAACTTTGCCAAGTTG 6907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073717065131648