Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2146 374 8e-99 seq2057 212 6e-50 seq3431 114 1e-20 seq2921 111 1e-19 >seq2146 Length=21837 Score = 374 bits (414), Expect = 8e-99 Identities = 1007/1516 (66%), Gaps = 44/1516 (3%) Strand=Plus/Minus Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACG 22511 |||| || ||||| |||||||| | || || ||||| ||| | |||| ||| | | Sbjct 17033 GGTTGACGACTTGGAACTCGCCAGCCAGCACACGGCGGGTGTACAGGTTGCTCGTGTAAG 16974 Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571 | || || | || ||| ||||| |||||| ||||| || |||||||| || || | Sbjct 16973 GCTCAAAGCACTCGTTGAAGCCCAGGATCTGACTCGTCGAGGCCGTCGGCATAGGTGCGA 16914 Query 22572 ACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCC 22631 || |||||||| | | |||||| | ||| || | ||||| | | |||||||| Sbjct 16913 GCAACAGCGAGTTCCGAAGACCGTGCGAGGCAATGTTGCGCTTGATCTCAGCCCAGTCCC 16854 Query 22632 ACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCG 22691 | ||| || || || || | ||||||| ||||| || | | |||| || |||| Sbjct 16853 AAAGACCGCTGGGGGTAAC---GCCCCACATGTCGTACTGGAGCTCGCCCTTGCTGGCCG 16797 Query 22692 GGCTGCCTTCGTACGTTTCGTACGGACCATATATCGC-GGCAAGTTCGCA-GCTCGCCTC 22749 ||| ||| ||||| || ||||| || || | || |||||| ||||| | |||| || Sbjct 16796 GGCAGCCCTCGTATGTCTCGTA-GGTCCCGAGCTCCTTGGCAAGCTCGCACGATCGC-TC 16739 Query 22750 CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA-TTC--GGCGGCGGCGAC 22806 | ||| ||| || || ||||||||||| | |||| | ||| ||| ||| ||| Sbjct 16738 AAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTTCTTGGCCTCGG-GAC 16680 Query 22807 GCTTTCGTACGGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATAC 22865 | || | ||| || | ||| |||| ||| ||||| || | ||| | || || || | Sbjct 16679 --TGTCAAA-GGCGTAGCCCATGATCATGAATGCGTCGGCGAGACCGTTGACTCCGATGC 16623 Query 22866 CGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAAT 22925 |||| || |||| || |||||| || |||||||||| ||| || | ||| || Sbjct 16622 CGATGGGGCGGTGGCGCATGTTCGACTTCTTGGCCTCGGGCACAGGGTAGTAGTTCACAT 16563 Query 22926 CGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGT 22985 |||| | |||| | ||| | || | || || | | |||| Sbjct 16562 CGATGATCTTGTTGAGGTTGCCACAGACGACCTTGGTGACCTCGTGAAGCTTCTTGAAGT 16503 Query 22986 CGTAAACGCCCGA-TTG---TACAA--CAAACTTGTTGA----CGGC-GATCGA----GG 23030 | || | || ||| | | | | | | | || |||| || | | || Sbjct 16502 CATATGTCCTCGTGTTGGTTTGCGAGTCGTAATGGATGTAGGTCGGCAGAGCCATACTGG 16443 Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGA-CG-TGTACTCTACAATTTCGGTACATAG 23088 |||| ||||| || || |||||||| ||| || ||||||||| || || || || || Sbjct 16442 CAAGGTTGCAGACAGCGACCTCGTCC--GGAGCGCTGTACTCTATGATCTCCGTGCAAAG 16385 Query 23089 ATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTT 23148 || ||| || ||||| | || ||||||| || || ||| | ||||| Sbjct 16384 GTTAGAGTTCTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCAGCGTCCTT 16325 Query 23149 GTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGT 23208 ||| |||||| | || |||| ||||| ||| | ||| | | || ||| | | Sbjct 16324 GTAAAGCATGAAAGGGTTGCCAGTCTCCGTCTGGGCCTCCAGAACGGCGTACCAGAGCTT 16265 Query 23209 CTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGT 23267 |||||| | || ||| || | | || || ||||||||| | ||| | || | Sbjct 16264 CTGAGCCTTGAC-CGTGCGGCGAGCACGACCCTCGCGCTCGTACTTCTCGTAGAGGGCCT 16206 Query 23268 CAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGA-CACATGAGACTC 23326 | ||||| |||| || |||||| || ||||| | | || ||| |||||||| | Sbjct 16205 CGAATTCCTCACCATAGACGTCGGCAAGACCGGGGCACT-CAGCGGGGCACATGAGCGAC 16147 Query 23327 CACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAAC 23386 ||| | || | ||| || || |||| || | || || ||||| || |||||||| Sbjct 16146 CACTCTCCGTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCAAAGGGCGTAGAAG 16087 Query 23387 AGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAAC 23446 || || |||||||| |||||||| |||||| |||||| | | || | || || || Sbjct 16086 AGCTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAACTCGAAG 16027 Query 23447 ACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCC 23506 ||||||| ||||| ||||| | ||| | |||||| || ||||||| ||| ||||| ||| Sbjct 16026 ACGTCCGAGTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCGCTTGTTGCCACCC 15967 Query 23507 TGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGAC 23566 || |||||||| || || ||||||||| | |||| ||||| || || | |||||||| Sbjct 15966 TGGTCGACGTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAACAATGCCGTTGGAG 15907 Query 23567 GCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCT 23626 ||||| || || | || || | |||| | | ||||| || || || Sbjct 15906 ACGCCGTTGGTTCCAGCAATGTAAGAGCCGGTGCCTCGGATGCAGTGAATGTTGAGCCCG 15847 Query 23627 ATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCG 23686 ||||| ||| ||| || ||||| ||||| || || |||||||||||||| ||| Sbjct 15846 ATGCCACCGGCCGTCTTGCTGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATGCCATCG 15787 Query 23687 ATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCG 23746 ||| ||| || || ||| ||||| ||| || || ||||| || | ||||| || || Sbjct 15786 ATGGAGTCATCCTTCATCGTGACCAGGAAGCAGGATGACATCTGGGGGTTGGGTGTTCCG 15727 Query 23747 GCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTG 23806 || ||| || || || |||||| || ||||| | |||||| || ||||| ||| Sbjct 15726 GCATTGAAGAGGGTGGGCGAGGCGTGGGTGAAGTACTTCTCCGACATGAGGTTGTAAGTG 15667 Query 23807 TCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTAT 23866 |||||||| ||||||||| ||||| || |||| |||||| ||||| | ||| | | Sbjct 15666 TCGATGGCCTGGTCAATGTCCCGCCCGTGAATGCCGACGGCGACTCGCATGAGCATATGT 15607 Query 23867 TGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923 || || |||| ||||| | ||||||||| | |||||| || || | | || Sbjct 15606 TGCGGCCTCTCGGCGACCTT---GCCGTTAATGCGCAGCAGATAAGAGCGCTCGAGAGTC 15550 Query 23924 TTAAATCCAAAATAGT 23939 || || || || |||| Sbjct 15549 TTGAAGCCGAAGTAGT 15534 >seq2057 Length=22280 Score = 212 bits (234), Expect = 6e-50 Identities = 556/837 (66%), Gaps = 35/837 (4%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| |||||||| |||||||| ||||| | || || | ||||| Sbjct 16973 ATCTGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACTGCTGAGGAGATCGACCTT 16914 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||| ||||| | | || || |||| | | ||||| | Sbjct 16913 TCCAAGGACATGCACGACTGGGACAACAAGTTGAACGACAATGAGCGTCACTTTATCAGC 16854 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| ||||| || |||||||| |||||||| | ||||| | Sbjct 16853 CACGTCCTCGCCTTCTTCGCAGCATCAGACGGTATTGTCAACGAGAACCTCGTCGAGCGG 16794 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||| || ||||||| | ||||| ||||||| ||||| || || | || Sbjct 16793 TTTAGTTCGGAGGTGCAAGCAGCAGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATG 16734 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC----AA 57862 || ||| | || || || | || || || |||||||| || ||| | ||| | Sbjct 16733 GAGAACATTCACTCGGAGACATACTCTCTGCTCATCGACACATACATTCGCGACCCTCAG 16674 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AA 57919 | ||| || ||| || || | || || || || || || | ||| |||| || Sbjct 16673 CAACGCGA---GTAC-CTCTTTGATGCCATGGAGACCATCCCTG---TCGTCAAGCAAAA 16621 Query 57920 GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCT 57976 ||| |||||| | || ||||| || || ||| | | || || || ||| | | Sbjct 16620 GGCCGAGTGGGCCATGCGGTGGATCAA---CGACACCGAATCGACCTTTGCTGAGCGATT 16564 Query 57977 AATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTG 58036 ||||| ||||||||||| || || || ||||| || || |||||| | || || || Sbjct 16563 GATCGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCTGGGTCCTTTGCCTCCATCTTCTG 16504 Query 58037 GATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGA 58096 | | ||||| ||||| || ||||||||||| ||||| ||||||| | || || || Sbjct 16503 GCTCAAGAAGCGCGGTCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCAGCCGAGA 16444 Query 58097 CGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA--ACCG 58154 ||||||||| || || || |||||||||||| | | | ||| | |||| || || Sbjct 16443 CGAGGGTCTGCACACCGACTTTGCGTGCCTACTCTTCAGTCA---TCTCAAGAAGCGCCC 16387 Query 58155 ACGC---GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTT 58211 || | | | ||| ||||| ||| || ||| || ||| | ||||| | | || Sbjct 16386 ACACCCTGAGGTCG--TCTTGCGCATCATTGGCGAAGCTGTCACCATCGAGCAAGCTTTC 16329 Query 58212 GTCACCGAAGCCCTACCGGTGGCCA-TGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270 |||| || || || || || || || |||| |||||| | ||||| | || Sbjct 16328 CTCACTGATGCGCTGCC-ATGTTCATTGATCGGCATGAACGCCCGTCTGATGAGCCAATA 16270 Query 58271 CATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCATTACAACAC 58330 ||| |||||||| |||||| |||| || ||| || ||| || ||||| | Sbjct 16269 CATCGAGTTTGTCGCCGACCGACTGCTGGTCGCCCTCGGCAACGAGAAGCACTACAATGC 16210 Query 58331 GAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTT 58387 || |||||| || || || ||| | ||||| || | || ||||| |||||||| Sbjct 16209 GACAAATCCCTTCGACTTCATGGAGAACATCTCTCTGCAAGGAAAGACTAACTTTTT 16153 >seq3431 Length=10244 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || ||||| ||||||||| |||| || || | Sbjct 1325 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAGGTGGAGTCC 1266 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||| | ||||| || ||| | ||||||||| || | || || || Sbjct 1265 TCCGACACCATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAGGGGATCCCCCCGGA 1207 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||| || || || || || |||||| | || ||| ||| ||||||| || Sbjct 1206 CCAGCAGCGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGACGGACGCTGAGCGACTA 1147 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || || || ||||||||||| ||| Sbjct 1146 CAACATCCAGAAGGAGAGCACCCTTCATCTGGTCCTT 1110 >seq2921 Length=71014 Score = 111 bits (122), Expect = 1e-19 Identities = 171/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || ||||||||| |||| || || | || Sbjct 18334 CATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTC 18275 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||| | ||||| || ||| | ||||||||| || | || || |||| Sbjct 18274 CGACACGATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAGGGAATCCCCCCGGACC 18216 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || ||||| ||||| ||| | || ||| ||| | || || | Sbjct 18215 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACA 18156 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGC 31426 |||| || || || ||||| || || || || ||| | ||| | || ||| |||||| Sbjct 18155 ACATCCAGAAGGAGTCGACCCTCCACCTCGTGCTTCGCCTGCGTGGTGGTGCCAAGAAGC 18096 Query 31427 G 31427 | Sbjct 18095 G 18095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445746418521120